PCAT6 prostate cancer associated transcript 6
Information
- Symbol
- PCAT6
- Type
- ncRNA
- Description
- prostate cancer associated transcript 6
- Entrez Gene ID
- 100506696
- Genome
- hg19
- Position
- chr1:202,779,978-202,781,601
- Genome
- hg38
- Position
- chr1:202,810,850-202,812,473
- HGNC
- HGNC:43714 HGNC
- Ensembl
- ENSG00000228288 Ensembl
- Links
- NCBI Gene Cards OncoKB
Clinical Significance
| MGeND | ClinVar |
|---|
Ranking
| ClinVar | |
|---|---|
 |
0 |
 |
0 |
 |
0 |
 |
0 |
 |
0 |
Frequency
EXAC_EAS
EXAC_EAS
HGVD
HGVD
TOMMO
TOMMO
Gene
Position
EXAC_EAS
EXAC_EAS
HGVD
HGVD
TOMMO
TOMMO
Gene
Position
Disease area statistics
[No Data.]
Locus Zoom
Variants
Search Word
| Target data | : |
MGeND data only
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| Variant name | Gene | AA change | CDS | Japanese frequency |
TogoVar | MGeND | Genome | ClinVar | CIViC evidence | DisGeNET entry | COSMIC occurrence |
Prediction | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | Entry | Origin | Annotation | |||||||||||
Search Word
| Target data | : |
MGeND data only
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| Filtering | : |
| Name | MGeND | Type | Genome | Size | Chromosome | Start | Stop | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | ||||||||||||||
Search Word
| Target data | : |
MGeND data only
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| Category | : |
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| Filtering | : |
| Name | MGeND | Type | Genome | Gene symbol | Chromosome | Genomic start | Genomic stop | Strand | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | |||||||||||||||
| Type | ID |
|---|---|
| SYNONYM | KDM5B-AS1 |
| SYNONYM | KDM5BAS1 |
| SYNONYM | PCAN-R1 |
| SYNONYM | ncRNA-a2 |
| SYNONYM | onco-lncRNA-96 |
| HGNC | HGNC:43714 HGNC |
| Ensembl | ENSG00000228288 Ensembl |
| AllianceGenome | HGNC:43714 |
| Descrption | Source | Links |
|---|
| ID | Genome | Chromosome | Start | End | Length |
|---|---|---|---|---|---|
| ENST00000417262.5 | hg38 | chr1 | 202,810,962 | 202,811,913 | 952 |
| ENST00000425295.3 | hg38 | chr1 | 202,810,883 | 202,811,915 | 1,033 |
| ENST00000690240.1 | hg38 | chr1 | 202,810,876 | 202,811,915 | 1,040 |
| ENST00000686658.2 | hg38 | chr1 | 202,810,850 | 202,812,473 | 1,624 |
| ENST00000660963.2 | hg38 | chr1 | 202,810,954 | 202,811,912 | 959 |
| ENST00000686658.2 | hg19 | chr1 | 202,779,978 | 202,781,601 | 1,624 |
| ENST00000690240.1 | hg19 | chr1 | 202,780,004 | 202,781,043 | 1,040 |
| ENST00000425295.3 | hg19 | chr1 | 202,780,011 | 202,781,043 | 1,033 |
| ENST00000660963.2 | hg19 | chr1 | 202,780,082 | 202,781,040 | 959 |
| ENST00000417262.5 | hg19 | chr1 | 202,780,090 | 202,781,041 | 952 |
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