VSIG2 V-set and immunoglobulin domain containing 2
Information
- Symbol
- VSIG2
- Type
- protein-coding
- Description
- V-set and immunoglobulin domain containing 2
- Entrez Gene ID
- 23584
- Genome
- hg19
- Position
- chr11:124,617,370-124,622,151
- Genome
- hg38
- Position
- chr11:124,747,474-124,752,255
- MIM
- 606011 OMIM
- HGNC
- HGNC:17149 HGNC
- Ensembl
- ENSG00000019102 Ensembl
- Links
- NCBI Gene Cards OncoKB
Clinical Significance
| MGeND | ClinVar | |
|---|---|---|
| Likely benign | 0 | 6 |
| Uncertain significance | 0 | 48 |
Ranking
| ClinVar | |
|---|---|
 |
0 |
 |
0 |
 |
0 |
 |
54 |
 |
0 |
Frequency
EXAC_EAS
EXAC_EAS
HGVD
HGVD
TOMMO
TOMMO
Gene
Position
EXAC_EAS
EXAC_EAS
HGVD
HGVD
TOMMO
TOMMO
Gene
Position
Disease area statistics
[No Data.]
Locus Zoom
Variants
Search Word
| Target data | : |
MGeND data only
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| Variant name | Gene | AA change | CDS | Japanese frequency |
TogoVar | MGeND | Genome | ClinVar | CIViC evidence | DisGeNET entry | COSMIC occurrence |
Prediction | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | Entry | Origin | Annotation | |||||||||||
Search Word
| Target data | : |
MGeND data only
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| Filtering | : |
| Name | MGeND | Type | Genome | Size | Chromosome | Start | Stop | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | ||||||||||||||
Search Word
| Target data | : |
MGeND data only
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| Category | : |
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| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Gene symbol | Chromosome | Genomic start | Genomic stop | Strand | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | |||||||||||||||
| Type | ID |
|---|---|
| SYNONYM | 2210413P10Rik |
| SYNONYM | CTH |
| SYNONYM | CTXL |
| MIM | 606011 OMIM |
| HGNC | HGNC:17149 HGNC |
| Ensembl | ENSG00000019102 Ensembl |
| AllianceGenome | HGNC:17149 |
| Descrption | Source | Links |
|---|
| ID | Genome | Chromosome | Start | End | Length |
|---|---|---|---|---|---|
| ENST00000326621.10 | hg38 | chr11 | 124,747,474 | 124,752,255 | 4,782 |
| ENST00000403470.1 | hg38 | chr11 | 124,748,106 | 124,752,193 | 4,088 |
| ENST00000326621.10 | hg19 | chr11 | 124,617,370 | 124,622,151 | 4,782 |
| ENST00000403470.1 | hg19 | chr11 | 124,618,002 | 124,622,089 | 4,088 |
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