HMGB1 high mobility group box 1

Information
Symbol
HMGB1
Type
protein-coding
Description
high mobility group box 1
Entrez Gene ID
3146
Genome
hg19
Position
chr13:31,030,841-31,040,073
Genome
hg38
Position
chr13:30,456,704-30,465,936
MIM
163905 OMIM
HGNC
HGNC:4983 HGNC
Ensembl
ENSG00000189403 Ensembl
Links
NCBI Gene Cards OncoKB
Clinical Significance
MGeND ClinVar
Pathogenic 0 2
Likely pathogenic 1 0
Benign 0 8
Likely benign 0 8
Uncertain significance 0 10
Ranking
ClinVar
0
0
0
26
2
Frequency
EXAC_EAS
EXAC_EAS
HGVD
HGVD
TOMMO
TOMMO
Gene
Position
EXAC_EAS
EXAC_EAS
HGVD
HGVD
TOMMO
TOMMO
Gene
Position
Disease area statistics
Locus Zoom
Variants
Search Word
Target data :
MGeND data only
Category :
Search word :
Filtering :
Variant name Gene AA change CDS Japanese
frequency		 TogoVar MGeND Genome ClinVar CIViC evidence DisGeNET entry COSMIC
occurrence		 Prediction
Entry Origin Type Annotation Entry Origin Annotation
Search Word
Target data :
MGeND data only
Category :
Search word :
Filtering :
Name MGeND Type Genome Size Chromosome Start Stop Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Search Word
Target data :
MGeND data only
Category :
Search word :
Filtering :
Name MGeND Type Genome Gene symbol Chromosome Genomic start Genomic stop Strand Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
TypeID
SYNONYM HMG-1
SYNONYM HMG1
SYNONYM HMG3
SYNONYM SBP-1
MIM 163905 OMIM
HGNC HGNC:4983 HGNC
Ensembl ENSG00000189403 Ensembl
AllianceGenome HGNC:4983
DescrptionSourceLinks
IDGenomeChromosomeStartEndLength
ENST00000341423.10 hg38 chr13 30,456,704 30,465,936 9,233
ENST00000405805.5 hg38 chr13 30,458,747 30,617,597 158,851
ENST00000326004.4 hg38 chr13 30,461,496 30,465,938 4,443
ENST00000339872.8 hg38 chr13 30,459,850 30,464,310 4,461
ENST00000399494.5 hg38 chr13 30,460,907 30,465,242 4,336
ENST00000399489.5 hg38 chr13 30,460,895 30,464,247 3,353
ENST00000341423.10 hg19 chr13 31,030,841 31,040,073 9,233
ENST00000405805.5 hg19 chr13 31,032,884 31,191,734 158,851
ENST00000339872.8 hg19 chr13 31,033,987 31,038,447 4,461
ENST00000399489.5 hg19 chr13 31,035,032 31,038,384 3,353
ENST00000399494.5 hg19 chr13 31,035,044 31,039,379 4,336
ENST00000326004.4 hg19 chr13 31,035,633 31,040,075 4,443
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