FOXA2 forkhead box A2

Information
Symbol
FOXA2
Type
protein-coding
Description
forkhead box A2
Entrez Gene ID
3170
Genome
hg19
Position
chr20:22,561,636-22,565,210
Genome
hg38
Position
chr20:22,580,998-22,584,572
MIM
600288 OMIM
HGNC
HGNC:5022 HGNC
Ensembl
ENSG00000125798 Ensembl
Links
NCBI Gene Cards OncoKB
Clinical Significance
MGeND ClinVar
Likely pathogenic 0 2
Benign 0 34
Likely benign 0 64
Conflicting classifications of pathogenicity 0 6
not provided 1 0
Uncertain significance 0 102
Ranking
ClinVar
0
0
32
160
0
Frequency
EXAC_EAS
EXAC_EAS
HGVD
HGVD
TOMMO
TOMMO
Gene
Position
EXAC_EAS
EXAC_EAS
HGVD
HGVD
TOMMO
TOMMO
Gene
Position
Disease area statistics
Locus Zoom
Variants
Search Word
Target data :
MGeND data only
Category :
Search word :
Filtering :
Variant name Gene AA change CDS Japanese
frequency		 TogoVar MGeND Genome ClinVar CIViC evidence DisGeNET entry COSMIC
occurrence		 Prediction
Entry Origin Type Annotation Entry Origin Annotation
Search Word
Target data :
MGeND data only
Category :
Search word :
Filtering :
Name MGeND Type Genome Size Chromosome Start Stop Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Search Word
Target data :
MGeND data only
Category :
Search word :
Filtering :
Name MGeND Type Genome Gene symbol Chromosome Genomic start Genomic stop Strand Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
TypeID
SYNONYM HNF-3-beta
SYNONYM HNF3B
SYNONYM TCF3B
MIM 600288 OMIM
HGNC HGNC:5022 HGNC
Ensembl ENSG00000125798 Ensembl
AllianceGenome HGNC:5022
DescrptionSourceLinks
IDGenomeChromosomeStartEndLength
ENST00000419308.7 hg38 chr20 22,580,998 22,584,572 3,575
ENST00000377115.4 hg38 chr20 22,581,005 22,585,455 4,451
ENST00000419308.7 hg19 chr20 22,561,636 22,565,210 3,575
ENST00000377115.4 hg19 chr20 22,561,643 22,566,093 4,451
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