LFNG LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase

Information
Symbol
LFNG
Type
protein-coding
Description
LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
Entrez Gene ID
3955
Genome
hg19
Position
chr7:2,559,408-2,568,063
Genome
hg38
Position
chr7:2,519,774-2,528,429
MIM
602576 OMIM
HGNC
HGNC:6560 HGNC
Ensembl
ENSG00000106003 Ensembl
Links
NCBI Gene Cards OncoKB
Clinical Significance
MGeND ClinVar
Pathogenic 0 8
Likely pathogenic 0 2
Benign 0 56
Likely benign 0 224
Conflicting classifications of pathogenicity 0 14
not provided 2 0
Uncertain significance 0 184
Ranking
ClinVar
0
0
58
404
10
Frequency
EXAC_EAS
EXAC_EAS
HGVD
HGVD
TOMMO
TOMMO
Gene
Position
EXAC_EAS
EXAC_EAS
HGVD
HGVD
TOMMO
TOMMO
Gene
Position
Disease area statistics
Locus Zoom
Variants
Search Word
Target data :
MGeND data only
Category :
Search word :
Filtering :
Variant name Gene AA change CDS Japanese
frequency		 TogoVar MGeND Genome ClinVar CIViC evidence DisGeNET entry COSMIC
occurrence		 Prediction
Entry Origin Type Annotation Entry Origin Annotation
Search Word
Target data :
MGeND data only
Category :
Search word :
Filtering :
Name MGeND Type Genome Size Chromosome Start Stop Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Search Word
Target data :
MGeND data only
Category :
Search word :
Filtering :
Name MGeND Type Genome Gene symbol Chromosome Genomic start Genomic stop Strand Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
TypeID
SYNONYM SCDO3
MIM 602576 OMIM
HGNC HGNC:6560 HGNC
Ensembl ENSG00000106003 Ensembl
AllianceGenome HGNC:6560
DescrptionSourceLinks
IDGenomeChromosomeStartEndLength
ENST00000359574.7 hg38 chr7 2,519,862 2,529,177 9,316
ENST00000402045.5 hg38 chr7 2,517,863 2,528,429 10,567
ENST00000402506.5 hg38 chr7 2,512,529 2,528,427 15,899
ENST00000338732.7 hg38 chr7 2,518,554 2,528,427 9,874
ENST00000222725.10 hg38 chr7 2,519,774 2,528,429 8,656
ENST00000402506.5 hg19 chr7 2,552,163 2,568,061 15,899
ENST00000402045.5 hg19 chr7 2,557,497 2,568,063 10,567
ENST00000338732.7 hg19 chr7 2,558,188 2,568,061 9,874
ENST00000222725.10 hg19 chr7 2,559,408 2,568,063 8,656
ENST00000359574.7 hg19 chr7 2,559,496 2,568,811 9,316
Genome browser