LHCGR luteinizing hormone/choriogonadotropin receptor
Information
- Symbol
- LHCGR
- Type
- protein-coding
- Description
- luteinizing hormone/choriogonadotropin receptor
- Entrez Gene ID
- 3973
- Genome
- hg19
- Position
- chr2:48,913,913-48,982,863
- Genome
- hg38
- Position
- chr2:48,686,774-48,755,724
- MIM
- 152790 OMIM
- HGNC
- HGNC:6585 HGNC
- Ensembl
- ENSG00000138039 Ensembl
- Links
- NCBI Gene Cards OncoKB
Clinical Significance
| MGeND | ClinVar | |
|---|---|---|
| Pathogenic | 3 | 70 |
| Likely pathogenic | 0 | 30 |
| Benign | 16 | 107 |
| Likely benign | 0 | 74 |
| Conflicting classifications of pathogenicity | 0 | 50 |
| Uncertain significance | 0 | 152 |
Ranking
| ClinVar | |
|---|---|
 |
0 |
 |
0 |
 |
56 |
 |
303 |
 |
46 |
Frequency
EXAC_EAS
EXAC_EAS
HGVD
HGVD
TOMMO
TOMMO
Gene
Position
EXAC_EAS
EXAC_EAS
HGVD
HGVD
TOMMO
TOMMO
Gene
Position
Disease area statistics
Locus Zoom
Variants
Search Word
| Target data | : |
MGeND data only
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| Category | : |
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| Variant name | Gene | AA change | CDS | Japanese frequency |
TogoVar | MGeND | Genome | ClinVar | CIViC evidence | DisGeNET entry | COSMIC occurrence |
Prediction | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | Entry | Origin | Annotation | |||||||||||
Search Word
| Target data | : |
MGeND data only
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| Category | : |
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| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Size | Chromosome | Start | Stop | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | ||||||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Gene symbol | Chromosome | Genomic start | Genomic stop | Strand | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | |||||||||||||||
| Type | ID |
|---|---|
| SYNONYM | HHG |
| SYNONYM | LCGR |
| SYNONYM | LGR2 |
| SYNONYM | LH/CG-R |
| SYNONYM | LH/CGR |
| SYNONYM | LHR |
| SYNONYM | LHRHR |
| SYNONYM | LSH-R |
| SYNONYM | ULG5 |
| MIM | 152790 OMIM |
| HGNC | HGNC:6585 HGNC |
| Ensembl | ENSG00000138039 Ensembl |
| AllianceGenome | HGNC:6585 |
| Descrption | Source | Links |
|---|
| ID | Genome | Chromosome | Start | End | Length |
|---|---|---|---|---|---|
| ENST00000401907.5 | hg38 | chr2 | 48,687,669 | 48,755,730 | 68,062 |
| ENST00000403273.5 | hg38 | chr2 | 48,687,669 | 48,755,730 | 68,062 |
| ENST00000405626.5 | hg38 | chr2 | 48,687,643 | 48,755,671 | 68,029 |
| ENST00000294954.12 | hg38 | chr2 | 48,686,774 | 48,755,724 | 68,951 |
| ENST00000294954.12 | hg19 | chr2 | 48,913,913 | 48,982,863 | 68,951 |
| ENST00000405626.5 | hg19 | chr2 | 48,914,782 | 48,982,810 | 68,029 |
| ENST00000403273.5 | hg19 | chr2 | 48,914,808 | 48,982,869 | 68,062 |
| ENST00000401907.5 | hg19 | chr2 | 48,914,808 | 48,982,869 | 68,062 |
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