LY9 lymphocyte antigen 9

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Information
Clinical Significance
Ranking
Frequency
Disease area statistics
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Information

Symbol: LY9
Type: protein-coding
Description: lymphocyte antigen 9
Entrez Gene ID: 4063
Genome: hg19
Position: chr1:160,765,964-160,798,045
Genome: hg38
Position: chr1:160,796,174-160,828,255
MIM: 600684 OMIM
HGNC: HGNC:6730 HGNC
Ensembl: ENSG00000122224 Ensembl
Links: NCBI Gene Cards OncoKB

Clinical Significance

	MGeND	ClinVar
Benign	0	4
Likely benign	0	10
association	0	2
risk factor	0	2
Uncertain significance	0	80

Ranking

	ClinVar
	0
	0
	0
	96
	2

Frequency

EXAC_EAS

EXAC_EAS

HGVD

HGVD

TOMMO

TOMMO

Gene

Position

EXAC_EAS

EXAC_EAS

HGVD

HGVD

TOMMO

TOMMO

Gene

Position

Disease area statistics

[No Data.]

Locus Zoom

Variants

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Target data	:	MGeND data only
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Variant name	Gene	AA change	CDS	Japanese frequency	TogoVar	MGeND				Genome	ClinVar			CIViC evidence	DisGeNET entry	COSMIC occurrence	Prediction
Variant name	Gene	AA change	CDS	Japanese frequency	TogoVar	Entry	Origin	Type	Annotation	Genome	Entry	Origin	Annotation	CIViC evidence	DisGeNET entry	COSMIC occurrence	Prediction

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Target data	:	MGeND data only
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Name	MGeND				Type	Genome	Size	Chromosome	Start	Stop	Ref	Alt	ClinVar	Origin	Entry	CIViC evidence	DisGeNET entry
Name	Entry	Origin	Type	Annotation	Type	Genome	Size	Chromosome	Start	Stop	Ref	Alt	ClinVar	Origin	Entry	CIViC evidence	DisGeNET entry

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Target data	:	MGeND data only
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Name	MGeND				Type	Genome	Gene symbol	Chromosome	Genomic start	Genomic stop	Strand	Ref	Alt	ClinVar	Origin	Entry	CIViC evidence	DisGeNET entry
Name	Entry	Origin	Type	Annotation	Type	Genome	Gene symbol	Chromosome	Genomic start	Genomic stop	Strand	Ref	Alt	ClinVar	Origin	Entry	CIViC evidence	DisGeNET entry

Type	ID
SYNONYM	CD229
SYNONYM	SLAMF3
SYNONYM	hly9
SYNONYM	mLY9
MIM	600684 OMIM
HGNC	HGNC:6730 HGNC
Ensembl	ENSG00000122224 Ensembl
AllianceGenome	HGNC:6730

Descrption	Source	Links

ID	Genome	Chromosome	Start	End	Length
ENST00000392203.8	hg38	chr1	160,796,112	160,828,255	32,144
ENST00000368039.2	hg38	chr1	160,796,187	160,802,698	6,512
ENST00000368037.9	hg38	chr1	160,796,074	160,828,261	32,188
ENST00000263285.11	hg38	chr1	160,796,174	160,828,255	32,082
ENST00000368037.9	hg19	chr1	160,765,864	160,798,051	32,188
ENST00000392203.8	hg19	chr1	160,765,902	160,798,045	32,144
ENST00000263285.11	hg19	chr1	160,765,964	160,798,045	32,082
ENST00000368039.2	hg19	chr1	160,765,977	160,772,488	6,512

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