PTPN1 protein tyrosine phosphatase non-receptor type 1

Information
Symbol
PTPN1
Type
protein-coding
Description
protein tyrosine phosphatase non-receptor type 1
Entrez Gene ID
5770
Genome
hg19
Position
chr20:49,126,920-49,201,778
Genome
hg38
Position
chr20:50,510,383-50,585,241
MIM
176885 OMIM
HGNC
HGNC:9642 HGNC
Ensembl
ENSG00000196396 Ensembl
Links
NCBI Gene Cards OncoKB
Clinical Significance
MGeND ClinVar
Benign 0 4
Likely benign 0 8
not provided 1 0
risk factor 0 2
Uncertain significance 0 12
Ranking
ClinVar
0
0
4
20
2
Frequency
EXAC_EAS
EXAC_EAS
HGVD
HGVD
TOMMO
TOMMO
Gene
Position
EXAC_EAS
EXAC_EAS
HGVD
HGVD
TOMMO
TOMMO
Gene
Position
Disease area statistics
Locus Zoom
Variants
Search Word
Target data :
MGeND data only
Category :
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Variant name Gene AA change CDS Japanese
frequency		 TogoVar MGeND Genome ClinVar CIViC evidence DisGeNET entry COSMIC
occurrence		 Prediction
Entry Origin Type Annotation Entry Origin Annotation
Search Word
Target data :
MGeND data only
Category :
Search word :
Filtering :
Name MGeND Type Genome Size Chromosome Start Stop Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Search Word
Target data :
MGeND data only
Category :
Search word :
Filtering :
Name MGeND Type Genome Gene symbol Chromosome Genomic start Genomic stop Strand Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
TypeID
SYNONYM PTP1B
MIM 176885 OMIM
HGNC HGNC:9642 HGNC
Ensembl ENSG00000196396 Ensembl
AllianceGenome HGNC:9642
DescrptionSourceLinks
IDGenomeChromosomeStartEndLength
ENST00000371621.5 hg38 chr20 50,510,383 50,585,241 74,859
ENST00000541713.5 hg38 chr20 50,510,321 50,584,760 74,440
ENST00000541713.5 hg19 chr20 49,126,858 49,201,297 74,440
ENST00000371621.5 hg19 chr20 49,126,920 49,201,778 74,859
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