PTPRJ protein tyrosine phosphatase receptor type J
Information
- Symbol
- PTPRJ
- Type
- protein-coding
- Description
- protein tyrosine phosphatase receptor type J
- Entrez Gene ID
- 5795
- Genome
- hg19
- Position
- chr11:48,002,111-48,192,391
- Genome
- hg38
- Position
- chr11:47,980,559-48,170,839
- MIM
- 600925 OMIM
- HGNC
- HGNC:9673 HGNC
- Ensembl
- ENSG00000149177 Ensembl
- Links
- NCBI Gene Cards OncoKB
Clinical Significance
| MGeND | ClinVar | |
|---|---|---|
| Pathogenic | 0 | 6 |
| Benign | 0 | 18 |
| Likely benign | 0 | 68 |
| Uncertain significance | 0 | 132 |
Ranking
| ClinVar | |
|---|---|
 |
0 |
 |
0 |
 |
8 |
 |
200 |
 |
14 |
Frequency
EXAC_EAS
EXAC_EAS
HGVD
HGVD
TOMMO
TOMMO
Gene
Position
EXAC_EAS
EXAC_EAS
HGVD
HGVD
TOMMO
TOMMO
Gene
Position
Disease area statistics
[No Data.]
Locus Zoom
Variants
Search Word
| Target data | : |
MGeND data only
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| Variant name | Gene | AA change | CDS | Japanese frequency |
TogoVar | MGeND | Genome | ClinVar | CIViC evidence | DisGeNET entry | COSMIC occurrence |
Prediction | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | Entry | Origin | Annotation | |||||||||||
Search Word
| Target data | : |
MGeND data only
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| Filtering | : |
| Name | MGeND | Type | Genome | Size | Chromosome | Start | Stop | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | ||||||||||||||
Search Word
| Target data | : |
MGeND data only
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| Category | : |
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| Filtering | : |
| Name | MGeND | Type | Genome | Gene symbol | Chromosome | Genomic start | Genomic stop | Strand | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | |||||||||||||||
| Type | ID |
|---|---|
| SYNONYM | CD148 |
| SYNONYM | DEP1 |
| SYNONYM | HPTP eta |
| SYNONYM | HPTPeta |
| SYNONYM | R-PTP-ETA |
| SYNONYM | R-PTP-J |
| SYNONYM | SCC1 |
| SYNONYM | THC10 |
| MIM | 600925 OMIM |
| HGNC | HGNC:9673 HGNC |
| Ensembl | ENSG00000149177 Ensembl |
| AllianceGenome | HGNC:9673 |
| Descrption | Source | Links |
|---|
| ID | Genome | Chromosome | Start | End | Length |
|---|---|---|---|---|---|
| ENST00000418331.7 | hg38 | chr11 | 47,980,559 | 48,170,839 | 190,281 |
| ENST00000440289.6 | hg38 | chr11 | 47,980,580 | 48,132,720 | 152,141 |
| ENST00000698881.1 | hg38 | chr11 | 47,980,425 | 48,170,839 | 190,415 |
| ENST00000698881.1 | hg19 | chr11 | 48,001,977 | 48,192,391 | 190,415 |
| ENST00000418331.7 | hg19 | chr11 | 48,002,111 | 48,192,391 | 190,281 |
| ENST00000440289.6 | hg19 | chr11 | 48,002,132 | 48,154,272 | 152,141 |
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