CALR calreticulin

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Information

Symbol: CALR
Type: protein-coding
Description: calreticulin
Entrez Gene ID: 811
Genome: hg19
Position: chr19:13,049,423-13,055,303
Genome: hg38
Position: chr19:12,938,609-12,944,489
MIM: 109091 OMIM
HGNC: HGNC:1455 HGNC
Ensembl: ENSG00000179218 Ensembl
Links: NCBI Gene Cards OncoKB

Clinical Significance

	MGeND	ClinVar
Pathogenic	0	4
Benign	0	28
Likely benign	0	16
not provided	17	0
Uncertain significance	0	32

Ranking

	ClinVar
	0
	0
	4
	74
	0

Frequency

EXAC_EAS

EXAC_EAS

HGVD

HGVD

TOMMO

TOMMO

Gene

Position

EXAC_EAS

EXAC_EAS

HGVD

HGVD

TOMMO

TOMMO

Gene

Position

Disease area statistics

Locus Zoom

Variants

Search Word

Target data	:	MGeND data only
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Variant name	Gene	AA change	CDS	Japanese frequency	TogoVar	MGeND				Genome	ClinVar			CIViC evidence	DisGeNET entry	COSMIC occurrence	Prediction
Variant name	Gene	AA change	CDS	Japanese frequency	TogoVar	Entry	Origin	Type	Annotation	Genome	Entry	Origin	Annotation	CIViC evidence	DisGeNET entry	COSMIC occurrence	Prediction

Search Word

Target data	:	MGeND data only
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Name	MGeND				Type	Genome	Size	Chromosome	Start	Stop	Ref	Alt	ClinVar	Origin	Entry	CIViC evidence	DisGeNET entry
Name	Entry	Origin	Type	Annotation	Type	Genome	Size	Chromosome	Start	Stop	Ref	Alt	ClinVar	Origin	Entry	CIViC evidence	DisGeNET entry

Search Word

Target data	:	MGeND data only
Category	:
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Filtering	:

Name	MGeND				Type	Genome	Gene symbol	Chromosome	Genomic start	Genomic stop	Strand	Ref	Alt	ClinVar	Origin	Entry	CIViC evidence	DisGeNET entry
Name	Entry	Origin	Type	Annotation	Type	Genome	Gene symbol	Chromosome	Genomic start	Genomic stop	Strand	Ref	Alt	ClinVar	Origin	Entry	CIViC evidence	DisGeNET entry

Type	ID
SYNONYM	CALR1
SYNONYM	CRT
SYNONYM	HEL-S-99n
SYNONYM	RO
SYNONYM	SSA
SYNONYM	cC1qR
MIM	109091 OMIM
HGNC	HGNC:1455 HGNC
Ensembl	ENSG00000179218 Ensembl
AllianceGenome	HGNC:1455

Descrption	Source	Links

ID	Genome	Chromosome	Start	End	Length
ENST00000588454.6	hg38	chr19	12,938,645	12,944,489	5,845
ENST00000316448.10	hg38	chr19	12,938,609	12,944,489	5,881
ENST00000586760.2	hg38	chr19	12,938,609	12,944,403	5,795
ENST00000586760.2	hg19	chr19	13,049,423	13,055,217	5,795
ENST00000316448.10	hg19	chr19	13,049,423	13,055,303	5,881
ENST00000588454.6	hg19	chr19	13,049,459	13,055,303	5,845

Key	Value
strand	+
start	13,049,413
Gene Symbol	CALR
Entrez GeneId	811
Chr Band	19p13.3-p13.2
end	13,055,303
chr	chr19
Name	calreticulin

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