ENST00000460620.5 PTPN22

Information
Transcript ID
ENST00000460620.5
Genome
hg38
Position
chr1:113,813,811-113,871,712
Strand
-
CDS length
540
Amino acid length
180
Gene symbol
PTPN22
Gene type
protein-coding
Gene description
protein tyrosine phosphatase non-receptor type 22
Gene Entrez Gene ID
26191
Variants

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MGeND data only
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Variant name Gene AA change CDS Japanese
frequency		 TogoVar MGeND Genome ClinVar CIViC evidence DisGeNET entry COSMIC
occurrence		 Prediction
Entry Origin Type Annotation Entry Origin Annotation
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MGeND data only
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Name MGeND Type Genome Size Chromosome Start Stop Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
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MGeND data only
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Name MGeND Type Genome Gene symbol Chromosome Genomic start Genomic stop Strand Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Exon
Exon number Start Stop
8 113,813,811 113,814,969
7 113,819,577 113,819,654
6 113,856,382 113,856,441
5 113,857,738 113,857,776
4 113,858,478 113,858,573
3 113,859,002 113,859,078
2 113,859,352 113,859,460
1 113,871,537 113,871,712
CDS
Exon number Type Start Stop
7 CDS 113,819,583 113,819,654
6 CDS 113,856,382 113,856,441
5 CDS 113,857,738 113,857,776
4 CDS 113,858,478 113,858,573
3 CDS 113,859,002 113,859,078
2 CDS 113,859,352 113,859,460
1 CDS 113,871,537 113,871,623
Other genome
Genome Chromosome Start End Links
hg19 chr1 114,356,433 114,414,334 Link
CDS sequence
ATGGACCAAAGAGAAATTCTGCAGAAGTTCCTGGATGAGGCCCAAAGCAAGAAAATTACTAAAGAGGAGTTTGCCAATGAATTTCTGAAGCTGAAAAGGCAATCTACCAAGTACAAGGCAGACAAAACCTATCCTACAACTGTGGCTGAGAAGCCCAAGAATATCAAGAAAAACAGATATAAGGATATTTTGCCCTATGATTATAGCCGGGTAGAACTATCCCTGATAACCTCTGATGAGGATTCCAGCTACATCAATGCCAACTTCATTAAGGGAGTTTATGGACCCAAGGCTTATATTGCCACCCAGGGTCCTTTATCTACAACCCTCCTGGACTTCTGGAGGATGATTTGGGAATATAGTGTCCTTATCATTGTTATGGCATGCATGGAGTATGAAATGGGAAAGGAAGCTGAAAAAAGGAAATCTGATTATATAATCAGGACTCTAAAAGTTAAGTTCAATAGTGTATCTGTAATTCTTGCCCACCAAACAAGCCTGCAGAATCTGTTCAGTCAAATAACTCCAGCTCATTTCTGA
Amino sequence
MDQREILQKFLDEAQSKKITKEEFANEFLKLKRQSTKYKADKTYPTTVAEKPKNIKKNRYKDILPYDYSRVELSLITSDEDSSYINANFIKGVYGPKAYIATQGPLSTTLLDFWRMIWEYSVLIIVMACMEYEMGKEAEKRKSDYIIRTLKVKFNSVSVILAHQTSLQNLFSQITPAHF*