ENST00000376709.9 VSX1

Information
Transcript ID
ENST00000376709.9
Genome
hg38
Position
chr20:25,075,463-25,082,141
Strand
-
CDS length
1,098
Amino acid length
366
Gene symbol
VSX1
Gene type
protein-coding
Gene description
visual system homeobox 1
Gene Entrez Gene ID
30813
Variants

Display target variant


Search Word
Target data :
MGeND data only
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Variant name Gene AA change CDS Japanese
frequency		 TogoVar MGeND Genome ClinVar CIViC evidence DisGeNET entry COSMIC
occurrence		 Prediction
Entry Origin Type Annotation Entry Origin Annotation
Search Word
Target data :
MGeND data only
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Name MGeND Type Genome Size Chromosome Start Stop Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Search Word
Target data :
MGeND data only
Category :
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Name MGeND Type Genome Gene symbol Chromosome Genomic start Genomic stop Strand Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Exon
Exon number Start Stop
5 25,075,463 25,076,550
4 25,077,685 25,077,865
3 25,078,829 25,078,952
2 25,079,436 25,079,514
1 25,081,673 25,082,141
CDS
Exon number Type Start Stop
5 CDS 25,076,261 25,076,550
4 CDS 25,077,685 25,077,865
3 CDS 25,078,829 25,078,952
2 CDS 25,079,436 25,079,514
1 CDS 25,081,673 25,082,096
Other genome
Genome Chromosome Start End Links
hg19 chr20 25,056,099 25,062,777 Link
CDS sequence
ATGACCGGCCGGGACTCGCTTTCCGACGGGCGCACTAGCAGCAGGGCGCTGGTGCCTGGCGGTTCCCCTAGGGGCTCGCGCCCCCGGGGCTTCGCCATCACGGACCTGCTGGGCTTGGAGGCCGAGCTGCCGGCGCCCGCTGGCCCAGGACAGGGATCTGGCTGCGAGGGTCCGGCAGTCGCGCCGTGCCCGGGCCCGGGGCTTGACGGCTCCAGCCTGGCGCGTGGGGCCCTACCGCTGGGACTCGGCCTCCTCTGTGGCTTCGGCACGCAGCCGCCGGCGGCCGCTCGAGCACCCTGCCTGCTCCTAGCGGACGTGCCGTTCCTGCCGCCCAGGGGCCCCGAGCCCGCTGCCCCGCTGGCTCCCAGCCGTCCGCCGCCTGCGCTCGGCCGCCAGAAGCGCAGCGACAGCGTCTCCACGTCCGATGAGGACAGCCAGTCTGAAGACAGGAATGACCTAAAGGCATCCCCCACCTTGGGCAAGAGGAAGAAGCGGCGGCACAGGACAGTTTTCACTGCTCACCAGCTGGAAGAGTTGGAGAAGGCATTCAGCGAGGCCCACTACCCTGATGTGTATGCCCGAGAAATGCTGGCTGTGAAAACTGAGCTCCCCGAAGACCGGATACAGGTCTGGTTTCAAAACCGCAGGGCCAAATGGCGCAAGCGGGAGAAGCGCTGGGGCGGCAGCAGCGTGATGGCCGAGTACGGGCTGTACGGGGCCATGGTGCGCCACTGCATCCCGCTGCCAGACTCCGTGCTCAACTCCGCCGAGGGCGGCCTGCTGGGCTCCTGCGCGCCCTGGCTCCTGGGGATGCATAAAAAATCCATGGGGATGATAAGGAAGCCAGGAAGTGAAGATAAGTTGGCAGGACTCTGGGGCTCTGACCACTTCAAAGAAGGTTCTAGCCAGAGTGAGTCAGGATCACAGAGAGGCTCAGATAAAGTGAGCCCTGAGAATGGCTTGGAAGATGTGGCTATTGACCTCTCCAGCTCTGCCCGGCAGGAGACCAAGAAAGTGCACCCTGGGGCTGGTGCTCAAGGAGGCTCCAACTCCACGGCACTGGAGGGGCCCCAGCCAGGGAAGGTGGGAGCCACATGA
Amino sequence
MTGRDSLSDGRTSSRALVPGGSPRGSRPRGFAITDLLGLEAELPAPAGPGQGSGCEGPAVAPCPGPGLDGSSLARGALPLGLGLLCGFGTQPPAAARAPCLLLADVPFLPPRGPEPAAPLAPSRPPPALGRQKRSDSVSTSDEDSQSEDRNDLKASPTLGKRKKRRHRTVFTAHQLEELEKAFSEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRKREKRWGGSSVMAEYGLYGAMVRHCIPLPDSVLNSAEGGLLGSCAPWLLGMHKKSMGMIRKPGSEDKLAGLWGSDHFKEGSSQSESGSQRGSDKVSPENGLEDVAIDLSSSARQETKKVHPGAGAQGGSNSTALEGPQPGKVGAT*