ENST00000327154.10 RPAIN
Information
- Transcript ID
- ENST00000327154.10
- Genome
- hg38
- Position
- chr17:5,419,888-5,432,608
- Strand
- +
- CDS length
- 447
- Amino acid length
- 149
- Gene symbol
- RPAIN
- Gene type
- protein-coding
- Gene description
- RPA interacting protein
- Gene Entrez Gene ID
- 84268
Variants
Display target variant
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Variant name | Gene | AA change | CDS | Japanese frequency |
TogoVar | MGeND | Genome | ClinVar | CIViC evidence | DisGeNET entry | COSMIC occurrence |
Prediction | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | Entry | Origin | Annotation | |||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Size | Chromosome | Start | Stop | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | ||||||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Gene symbol | Chromosome | Genomic start | Genomic stop | Strand | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | |||||||||||||||
Exon
| Exon number | Start | Stop |
|---|---|---|
| 1 | 5,419,888 | 5,420,291 |
| 2 | 5,421,296 | 5,421,466 |
| 3 | 5,422,769 | 5,422,829 |
| 4 | 5,425,971 | 5,426,082 |
| 5 | 5,432,542 | 5,432,608 |
CDS
| Exon number | Type | Start | Stop |
|---|---|---|---|
| 1 | CDS | 5,420,211 | 5,420,291 |
| 2 | CDS | 5,421,296 | 5,421,466 |
| 3 | CDS | 5,422,769 | 5,422,829 |
| 4 | CDS | 5,425,971 | 5,426,082 |
| 5 | CDS | 5,432,542 | 5,432,563 |
Other genome
| Genome | Chromosome | Start | End | Links |
|---|---|---|---|---|
| hg19 | chr17 | 5,323,208 | 5,335,928 | Link |
CDS sequence
ATGGCGGAGTCGTTGAGGTCTCCGCGCCGCTCCCTGTACAAACTGGTGGGCTCGCCGCCTTGGAAAGAGGCTTTCCGGCAGAGATGCCTGGAGAGAATGAGAAACAGCCGGGACAGGCTCCTAAACAGGTACCGCCAGGCTGGAAGCAGTGGGCCAGGGAATTCTCAGAACAGCTTTCTAGTTCAAGAGGTGATGGAAGAAGAGTGGAATGCTTTGCAGTCAGTGGAGAATTGTCCAGAAGACTTGGCTCAGCTGGAGGAGCTGATAGACATGGCTGTGCTGGAGGAAATTCAACAGGAGCTGATCAACCAAGAGCAGTCCATCATCAGCGAGTATGAGAAGAGCTTGCAGTTTGATGAAAAGTGTCTCAGCATCATGCTGGCTGAGTGGGAGGCAAACCCACTCATCTGTCCTGTATGTACAAAGCCTGTGATACTTGGGCTGTGA
Amino sequence
MAESLRSPRRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGNSQNSFLVQEVMEEEWNALQSVENCPEDLAQLEELIDMAVLEEIQQELINQEQSIISEYEKSLQFDEKCLSIMLAEWEANPLICPVCTKPVILGL*