ENST00000380075.7 TRIM54
Information
- Transcript ID
- ENST00000380075.7
- Genome
- hg38
- Position
- chr2:27,282,429-27,307,435
- Strand
- +
- CDS length
- 1,077
- Amino acid length
- 359
- Gene symbol
- TRIM54
- Gene type
- protein-coding
- Gene description
- tripartite motif containing 54
- Gene Entrez Gene ID
- 57159
Variants
Display target variant
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
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| Search word | : | |
| Filtering | : |
| Variant name | Gene | AA change | CDS | Japanese frequency |
TogoVar | MGeND | Genome | ClinVar | CIViC evidence | DisGeNET entry | COSMIC occurrence |
Prediction | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | Entry | Origin | Annotation | |||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Size | Chromosome | Start | Stop | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | ||||||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Gene symbol | Chromosome | Genomic start | Genomic stop | Strand | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | |||||||||||||||
Exon
| Exon number | Start | Stop |
|---|---|---|
| 1 | 27,282,429 | 27,282,899 |
| 2 | 27,298,567 | 27,298,739 |
| 3 | 27,299,245 | 27,299,416 |
| 4 | 27,304,959 | 27,305,054 |
| 5 | 27,305,584 | 27,305,817 |
| 6 | 27,306,080 | 27,306,102 |
| 7 | 27,306,213 | 27,306,337 |
| 8 | 27,306,456 | 27,306,542 |
| 9 | 27,306,887 | 27,307,435 |
CDS
| Exon number | Type | Start | Stop |
|---|---|---|---|
| 1 | CDS | 27,282,732 | 27,282,899 |
| 2 | CDS | 27,298,567 | 27,298,739 |
| 3 | CDS | 27,299,245 | 27,299,416 |
| 4 | CDS | 27,304,959 | 27,305,054 |
| 5 | CDS | 27,305,584 | 27,305,817 |
| 6 | CDS | 27,306,080 | 27,306,102 |
| 7 | CDS | 27,306,213 | 27,306,337 |
| 8 | CDS | 27,306,456 | 27,306,541 |
Other genome
| Genome | Chromosome | Start | End | Links |
|---|---|---|---|---|
| hg19 | chr2 | 27,505,297 | 27,530,303 | Link |
CDS sequence
ATGAACTTCACAGTGGGTTTCAAGCCGCTGCTAGGGGATGCACACAGCATGGACAACCTGGAGAAGCAGCTCATCTGCCCCATCTGCCTGGAGATGTTCTCCAAACCAGTGGTGATCCTGCCCTGCCAACACAACCTGTGCCGCAAATGTGCCAACGACGTCTTCCAGGCCTCGAATCCTCTATGGCAGTCCCGGGGCTCCACCACTGTGTCTTCAGGAGGCCGTTTCCGCTGCCCATCGTGCAGGCATGAGGTTGTCCTGGACAGACACGGTGTCTACGGCCTGCAGCGAAACCTGCTAGTGGAGAACATTATCGACATTTACAAGCAGGAGTCATCCAGGCCGCTGCACTCCAAGGCTGAGCAGCACCTCATGTGCGAGGAGCATGAAGAAGAGAAGATCAATATTTACTGCCTGAGCTGTGAGGTGCCCACCTGCTCTCTCTGCAAGGTCTTCGGTGCCCACAAGGACTGTGAGGTGGCCCCACTGCCCACCATTTACAAACGCCAGAAGAGTGAGCTCAGCGATGGCATCGCGATGCTGGTGGCAGGCAATGACCGCGTGCAAGCAGTGATCACACAGATGGAGGAGGTGTGCCAGACTATCGAGGACAATAGCCGGAGGCAGAAGCAGTTGTTAAACCAGAGGTTTGAGAGCCTGTGCGCAGTGCTGGAGGAGCGCAAGGGTGAGCTGCTGCAGGCGCTGGCCCGGGAGCAAGAGGAGAAGCTGCAGCGCGTCCGCGGCCTCATCCGTCAGTATGGCGACCACCTGGAGGCCTCCTCTAAGCTGGTGGAGTCTGCCATCCAGTCCATGGAAGAGCCACAAATGGCGCTGTATCTCCAGCAGGCCAAGGAGCTGATCAATAAGGTCGGGGCCATGTCGAAGGTGGAGCTGGCAGGGCGGCCGGAGCCAGGCTATGAGAGCATGGAGCAATTCACCGTAAGGGTGGAGCACGTGGCCGAAATGCTGCGGACCATCGACTTCCAGCCAGGCGCTTCCGGGGAGGAAGAGGAGGTGGCCCCAGACGGAGAGGAGGGCAGCGCGGGGCCGGAGGAAGAGCGGCCGGATGGGCCTTAA
Amino sequence
MNFTVGFKPLLGDAHSMDNLEKQLICPICLEMFSKPVVILPCQHNLCRKCANDVFQASNPLWQSRGSTTVSSGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESSRPLHSKAEQHLMCEEHEEEKINIYCLSCEVPTCSLCKVFGAHKDCEVAPLPTIYKRQKSELSDGIAMLVAGNDRVQAVITQMEEVCQTIEDNSRRQKQLLNQRFESLCAVLEERKGELLQALAREQEEKLQRVRGLIRQYGDHLEASSKLVESAIQSMEEPQMALYLQQAKELINKVGAMSKVELAGRPEPGYESMEQFTVRVEHVAEMLRTIDFQPGASGEEEEVAPDGEEGSAGPEEERPDGP*