ENST00000545856.8 PRPF40A

Information
Transcript ID
ENST00000545856.8
Genome
hg19
Position
chr2:153,508,246-153,573,975
Strand
-
CDS length
2,919
Amino acid length
973
Gene symbol
PRPF40A
Gene type
protein-coding
Gene description
pre-mRNA processing factor 40 homolog A
Gene Entrez Gene ID
55660
Variants

Display target variant


Search Word
Target data :
MGeND data only
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Variant name Gene AA change CDS Japanese
frequency		 TogoVar MGeND Genome ClinVar CIViC evidence DisGeNET entry COSMIC
occurrence		 Prediction
Entry Origin Type Annotation Entry Origin Annotation
Search Word
Target data :
MGeND data only
Category :
Search word :
Filtering :
Name MGeND Type Genome Size Chromosome Start Stop Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Search Word
Target data :
MGeND data only
Category :
Search word :
Filtering :
Name MGeND Type Genome Gene symbol Chromosome Genomic start Genomic stop Strand Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Exon
Exon number Start Stop
26 153,508,246 153,512,912
25 153,514,403 153,514,534
24 153,515,462 153,515,523
23 153,515,607 153,515,703
22 153,515,784 153,515,870
21 153,519,117 153,519,212
20 153,519,549 153,519,686
19 153,520,169 153,520,285
18 153,520,390 153,520,481
17 153,520,652 153,520,766
16 153,525,651 153,525,784
15 153,526,745 153,526,895
14 153,527,787 153,527,895
13 153,528,973 153,529,137
12 153,529,492 153,529,556
11 153,530,112 153,530,220
10 153,532,919 153,533,293
9 153,533,965 153,533,989
8 153,535,570 153,535,623
7 153,535,866 153,535,986
6 153,537,740 153,537,850
5 153,547,476 153,547,492
4 153,549,552 153,549,582
3 153,551,056 153,551,136
2 153,572,509 153,572,640
1 153,573,744 153,573,975
CDS
Exon number Type Start Stop
26 CDS 153,512,820 153,512,912
25 CDS 153,514,403 153,514,534
24 CDS 153,515,462 153,515,523
23 CDS 153,515,607 153,515,703
22 CDS 153,515,784 153,515,870
21 CDS 153,519,117 153,519,212
20 CDS 153,519,549 153,519,686
19 CDS 153,520,169 153,520,285
18 CDS 153,520,390 153,520,481
17 CDS 153,520,652 153,520,766
16 CDS 153,525,651 153,525,784
15 CDS 153,526,745 153,526,895
14 CDS 153,527,787 153,527,895
13 CDS 153,528,973 153,529,137
12 CDS 153,529,492 153,529,556
11 CDS 153,530,112 153,530,220
10 CDS 153,532,919 153,533,293
9 CDS 153,533,965 153,533,989
8 CDS 153,535,570 153,535,623
7 CDS 153,535,866 153,535,986
6 CDS 153,537,740 153,537,850
5 CDS 153,547,476 153,547,492
4 CDS 153,549,552 153,549,582
3 CDS 153,551,056 153,551,136
2 CDS 153,572,509 153,572,640
1 CDS 153,573,744 153,573,953
Other genome
Genome Chromosome Start End Links
hg38 chr2 152,651,732 152,717,461 Link
CDS sequence
ATGTGTAGCGGCAGTGGCCGCCGGCGGAGCAGTCTGAGCCCGACGATGAGGCCGGGGACGGGAGCTGAGCGTGGAGGCCTCATGGTGAGTGAAATGGAGAGCCATCCTCCCTCGCAGGGTCCTGGGGACGGGGAGCGGAGATTGTCCGGCTCAAGCCTCTGCTCCGGCTCTTGGGTCTCTGCTGACGGCTTCCTGAGGAGACGGCCCTCGATGGGGCACCCTGGCATGCATTATGCCCCAATGGGAATGCACCCTATGGGTCAGAGAGCGAATATGCCTCCTGTACCTCATGGAATGATGCCGCAGATGATGCCCCCTATGGGAGGGCCACCAATGGGACAAATGCCTGGAATGATGTCGTCAGTAATGCCTGGAATGATGATGTCTCATATGTCTCAGGCTTCCATGCAGCCTGCCTTACCGCCAGGAGTAAATAGTATGGATGTAGCAGCAGGTACAGCATCTGGTGCAAAATCAATGTGGACTGAACATAAATCACCTGATGGAAGGACTTACTACTACAACACTGAAACCAAACAGTCTACCTGGGAGAAACCAGATGATCTTAAAACACCTGCTGAGCAACTCTTATCTAAATGCCCCTGGAAGGAATACAAATCAGATTCTGGAAAGCCTTACTATTATAATTCTCAAACAAAAGAATCTCGCTGGGCCAAACCTAAAGAACTTGAGGATCTTGAAGGATACCAGAATACCATTGTTGCTGGAAGTCTTATTACAAAATCAAACCTGCATGCAATGATCAAAGCTGAAGAAAGCAGTAAGCAAGAAGAGTGCACCACAACATCAACAGCCCCAGTCCCTACAACAGAAATTCCGACCACAATGAGCACCATGGCTGCTGCCGAAGCAGCAGCTGCTGTTGTTGCAGCAGCAGCAGCGGCAGCAGCAGCAGCAGCTGCAGCCAATGCTAATGCTTCCACTTCTGCTTCTAATACTGTCAGTGGAACTGTTCCAGTTGTTCCTGAGCCTGAAGTTACTTCCATTGTTGCTACTGTTGTAGATAATGAGAATACAGTAACTATTTCAACTGAGGAACAAGCACAACTTACTAGTACCCCTGCTATTCAGGATCAAAGTGTGGAAGTATCCAGTAATACTGGAGAAGAAACATCTAAGCAAGAAACTGTAGCTGATTTTACTCCCAAAAAAGAAGAGGAGGAGAGCCAACCAGCAAAGAAAACATACACTTGGAATACAAAGGAAGAGGCAAAGCAAGCTTTTAAAGAATTATTGAAAGAAAAGCGGGTACCATCGAATGCTTCATGGGAGCAGGCTATGAAAATGATTATTAATGATCCACGATACAGTGCTTTGGCAAAGTTAAGTGAAAAAAAGCAAGCCTTTAATGCCTATAAAGTCCAGACAGAAAAAGAAGAAAAAGAAGAAGCAAGATCAAAGTACAAAGAGGCTAAGGAATCCTTTCAGCGTTTTCTTGAAAATCATGAGAAAATGACTTCTACAACCAGATACAAAAAAGCAGAGCAAATGTTTGGAGAGATGGAAGTTTGGAATGCAATATCAGAACGTGATCGTCTTGAAATCTATGAAGATGTTTTGTTCTTTCTTTCAAAAAAAGAAAAGGAACAAGCAAAGCAGTTGCGAAAGAGAAATTGGGAAGCCTTAAAAAACATACTTGACAACATGGCTAATGTAACATACTCTACCACTTGGTCTGAAGCCCAGCAGTATCTGATGGATAATCCAACTTTTGCAGAAGATGAGGAGTTACAAAATATGGACAAAGAAGATGCATTAATTTGCTTTGAAGAACACATTCGGGCTTTAGAAAAGGAGGAAGAAGAAGAAAAACAGAAGAGTTTGCTGAGAGAAAGGAGACGACAGCGAAAAAATAGGGAATCTTTCCAGATATTTTTAGATGAATTACATGAACATGGACAACTGCATTCTATGTCATCTTGGATGGAATTGTATCCAACTATTAGTTCTGATATTAGATTCACTAATATGCTTGGTCAGCCTGGATCAACTGCACTTGATCTTTTCAAGTTTTATGTTGAGGATCTTAAAGCACGTTATCATGACGAGAAGAAGATAATAAAAGACATTCTAAAGGATAAAGGATTTGTAGTTGAAGTAAACACTACTTTTGAAGATTTTGTGGCGATAATCAGTTCAACTAAAAGATCAACTACATTAGATGCTGGAAATATCAAATTGGCTTTCAATAGTTTACTAGAAAAGGCAGAAGCCCGTGAACGTGAAAGAGAAAAAGAAGAGGCTCGGAAGATGAAACGAAAAGAATCTGCATTTAAGAGTATGTTAAAACAAGCTGCTCCTCCGATAGAATTGGATGCTGTCTGGGAAGATATCCGTGAGAGATTTGTAAAAGAGCCAGCATTTGAGGACATAACTCTAGAATCTGAAAGAAAACGAATATTTAAAGATTTTATGCATGTGCTTGAGCATGAATGTCAGCATCATCATTCAAAGAACAAGAAACATTCTAAGAAATCTAAAAAACATCATAGGAAACGTTCCCGCTCTCGATCGGGGTCAGATTCAGATGATGATGATAGCCATTCAAAGAAAAAAAGACAGCGATCAGAGTCTCGTTCTGCTTCAGAACATTCTTCTAGTGCAGAGTCTGAGAGAAGTTATAAAAAGTCAAAAAAGCATAAGAAGAAAAGTAAGAAGAGGAGACATAAATCTGACTCTCCAGAATCCGATGCTGAGCGAGAGAAGGATAAAAAAGAAAAAGATCGGGAAAGTGAAAAAGACAGAACTAGACAAAGATCAGAATCAAAACACAAATCGCCTAAGAAAAAGACTGGAAAGGATTCTGGTAATTGGGATACTTCTGGCAGCGAACTGAGTGAAGGGGAATTGGAAAAGCGCAGAAGAACCCTTTTGGAGCAACTGGATGATGATCAATAA
Amino sequence
MCSGSGRRRSSLSPTMRPGTGAERGGLMVSEMESHPPSQGPGDGERRLSGSSLCSGSWVSADGFLRRRPSMGHPGMHYAPMGMHPMGQRANMPPVPHGMMPQMMPPMGGPPMGQMPGMMSSVMPGMMMSHMSQASMQPALPPGVNSMDVAAGTASGAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQTKESRWAKPKELEDLEGYQNTIVAGSLITKSNLHAMIKAEESSKQEECTTTSTAPVPTTEIPTTMSTMAAAEAAAAVVAAAAAAAAAAAAANANASTSASNTVSGTVPVVPEPEVTSIVATVVDNENTVTISTEEQAQLTSTPAIQDQSVEVSSNTGEETSKQETVADFTPKKEEEESQPAKKTYTWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQTEKEEKEEARSKYKEAKESFQRFLENHEKMTSTTRYKKAEQMFGEMEVWNAISERDRLEIYEDVLFFLSKKEKEQAKQLRKRNWEALKNILDNMANVTYSTTWSEAQQYLMDNPTFAEDEELQNMDKEDALICFEEHIRALEKEEEEEKQKSLLRERRRQRKNRESFQIFLDELHEHGQLHSMSSWMELYPTISSDIRFTNMLGQPGSTALDLFKFYVEDLKARYHDEKKIIKDILKDKGFVVEVNTTFEDFVAIISSTKRSTTLDAGNIKLAFNSLLEKAEAREREREKEEARKMKRKESAFKSMLKQAAPPIELDAVWEDIRERFVKEPAFEDITLESERKRIFKDFMHVLEHECQHHHSKNKKHSKKSKKHHRKRSRSRSGSDSDDDDSHSKKKRQRSESRSASEHSSSAESERSYKKSKKHKKKSKKRRHKSDSPESDAEREKDKKEKDRESEKDRTRQRSESKHKSPKKKTGKDSGNWDTSGSELSEGELEKRRRTLLEQLDDDQ*