ENST00000380283.5 PXDC1
Information
- Transcript ID
- ENST00000380283.5
- Genome
- hg19
- Position
- chr6:3,722,853-3,751,947
- Strand
- -
- CDS length
- 696
- Amino acid length
- 232
- Gene symbol
- PXDC1
- Gene type
- protein-coding
- Gene description
- PX domain containing 1
- Gene Entrez Gene ID
- 221749
Variants
Display target variant
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Variant name | Gene | AA change | CDS | Japanese frequency |
TogoVar | MGeND | Genome | ClinVar | CIViC evidence | DisGeNET entry | COSMIC occurrence |
Prediction | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | Entry | Origin | Annotation | |||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Size | Chromosome | Start | Stop | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | ||||||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Gene symbol | Chromosome | Genomic start | Genomic stop | Strand | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | |||||||||||||||
Exon
| Exon number | Start | Stop |
|---|---|---|
| 5 | 3,722,853 | 3,723,970 |
| 4 | 3,727,785 | 3,727,896 |
| 3 | 3,737,313 | 3,737,430 |
| 2 | 3,738,291 | 3,738,382 |
| 1 | 3,751,510 | 3,751,947 |
CDS
| Exon number | Type | Start | Stop |
|---|---|---|---|
| 5 | CDS | 3,723,853 | 3,723,970 |
| 4 | CDS | 3,727,785 | 3,727,896 |
| 3 | CDS | 3,737,313 | 3,737,430 |
| 2 | CDS | 3,738,291 | 3,738,382 |
| 1 | CDS | 3,751,510 | 3,751,765 |
Other genome
| Genome | Chromosome | Start | End | Links |
|---|---|---|---|---|
| hg38 | chr6 | 3,722,619 | 3,751,713 | Link |
CDS sequence
ATGGCCTCGGCGGTGTTTGAGGGCACGTCGCTCGTGAACATGTTCGTGCGCGGCTGCTGGGTGAACGGCATCCGCAGGCTCATCGTCAGCCGGCGCGGCGACGAAGAGGAGTTCTTCGAGATCCGCACGGAGTGGTCGGACCGCAGCGTGCTCTACCTGCACCGCAGCCTGGCGGACCTGGGCCGCCTGTGGCAGCGCCTGCGCGACGCCTTTCCCGAGGACCGGTCCGAACTGGCGCAGGGGCCGCTGCGGCAAGGACTGGTTGCCATAAAGGAAGCCCACGACATAGAGACCAGGCTTAATGAGGTGGAGAAGCTGCTGAAGACGATCATAAGCATGCCCTGTAAATATTCTAGATCGGAAGTTGTGCTCACCTTCTTCGAAAGATCTCCTCTGGATCAGGTGTTAAAAAATGATAATGTGCATAAAATTCAACCCAGCTTTCAAAGTCCAGTCAAAATATCAGAAATCATGAGGTCCAATGGATTTTGTTTAGCAAATACCGAAACAATAGTTATTGACCACAGTATACCAAATGGAAGAGACCAGCAGCTGGGCGTGGACCCAACAGAGCATTTATTTGAGAATGGCAGTGAGTTTCCCTCAGAGCTGGAGGACGGGGACGACCCAGCAGCCTACGTCACCAACCTGTCATATTACCACCTGGTCCCCTTCGAGACAGACATTTGGGACTGA
Amino sequence
MASAVFEGTSLVNMFVRGCWVNGIRRLIVSRRGDEEEFFEIRTEWSDRSVLYLHRSLADLGRLWQRLRDAFPEDRSELAQGPLRQGLVAIKEAHDIETRLNEVEKLLKTIISMPCKYSRSEVVLTFFERSPLDQVLKNDNVHKIQPSFQSPVKISEIMRSNGFCLANTETIVIDHSIPNGRDQQLGVDPTEHLFENGSEFPSELEDGDDPAAYVTNLSYYHLVPFETDIWD*