ENST00000535986.2 SMCO2

Information
Transcript ID
ENST00000535986.2
Genome
hg19
Position
chr12:27,599,669-27,655,118
Strand
+
CDS length
1,032
Amino acid length
344
Gene symbol
SMCO2
Gene type
protein-coding
Gene description
single-pass membrane protein with coiled-coil domains 2
Gene Entrez Gene ID
341346
Variants

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MGeND data only
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Variant name Gene AA change CDS Japanese
frequency		 TogoVar MGeND Genome ClinVar CIViC evidence DisGeNET entry COSMIC
occurrence		 Prediction
Entry Origin Type Annotation Entry Origin Annotation
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Target data :
MGeND data only
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Name MGeND Type Genome Size Chromosome Start Stop Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
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Target data :
MGeND data only
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Name MGeND Type Genome Gene symbol Chromosome Genomic start Genomic stop Strand Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Exon
Exon number Start Stop
1 27,599,669 27,599,758
2 27,623,555 27,623,698
3 27,625,709 27,625,808
4 27,627,719 27,627,846
5 27,628,515 27,628,664
6 27,641,393 27,641,480
7 27,647,233 27,647,289
8 27,648,613 27,648,788
9 27,654,856 27,655,118
CDS
Exon number Type Start Stop
2 CDS 27,623,565 27,623,698
3 CDS 27,625,709 27,625,808
4 CDS 27,627,719 27,627,846
5 CDS 27,628,515 27,628,664
6 CDS 27,641,393 27,641,480
7 CDS 27,647,233 27,647,289
8 CDS 27,648,613 27,648,788
9 CDS 27,654,856 27,655,054
Other genome
Genome Chromosome Start End Links
hg38 chr12 27,446,736 27,502,185 Link
CDS sequence
ATGGCTCTCACGCCCACAAACCTAAATAACAAAATGTCTCTGCAGATGAAGATGGACTGCCAGGAACAACAGCTGACTAAGAAAAACAATGGCTTTTTCCAAAAGCTCAATGTGACTGAAGGTGCAATGCAGGATTTGCTAAAGGAAATTATCAAAGTGGACCACATCTTAGACAGATCGGATGATGAGGATGACATTTCCTCCGAAAACCCTCAAACTGACTTCCTTCACAAGGGTATGTTGGAGCTAGAGGCTGAGCATGACCAGGACCTGAGTAAACAGGATAAGCAAGAAACAGATGTTGATGAGGACCCTCAAGCGTCTACATCTCTGCAGTTTTCAAAGAAGAACCTCCTTGAACTGTGTCTGAAGGGCATGTTCCTCAAGCTAAACTACTGGAACACAAAGATAGGTCTCCAGGTGAAAGAACTTGGAGCTGATTACATAGACGGAACGGAGAAAATTGACAATATTATTAAAAAAATAAATGTAACAGAAAACACAGTGAAGAGCTTATTAAAAGACATGCTGACCCTGAAGGGTCAAATTGAAAAGCTGGAGGACCGGGGCCTTGACCTTGATCAAGGGACAAGCACTGAGGTGAATACTTGTAATGAAGTTTATGAATTAAAGAAGAAAGTCATAGAAAGGCTGGAGGACCTTTGCAAGAATGTGGAACTGCTGAGTGCAAAGCTAAGGATGTATCAAATGGAGGCAGAGGACACTGACTCTCACAGTTCTGAGGAAATAGATACGGAAGAGATGGAGGCCCTGCTTCCTCAGGCCCCAGCATCCTTTTTAGTGCAGAAGTCTCCTCCCCGCAATACAGCATGGAAACGTGCACTGAGGATTTTCATCATGTTTGATGTCCTCACCGTCACTGGACTTTTATGTTACATACTATTTTTTGGTGCTACATTTCTCTTTGAAAGGGTGCTTCTGAGAATGCTTGGGTGCCGCACCACATGGGACCTACGGGAGATGAGAGAGCCTTTCTTGAATTTGGAAGTGGAAGCCTTGTTACCCTCCTAA
Amino sequence
MALTPTNLNNKMSLQMKMDCQEQQLTKKNNGFFQKLNVTEGAMQDLLKEIIKVDHILDRSDDEDDISSENPQTDFLHKGMLELEAEHDQDLSKQDKQETDVDEDPQASTSLQFSKKNLLELCLKGMFLKLNYWNTKIGLQVKELGADYIDGTEKIDNIIKKINVTENTVKSLLKDMLTLKGQIEKLEDRGLDLDQGTSTEVNTCNEVYELKKKVIERLEDLCKNVELLSAKLRMYQMEAEDTDSHSSEEIDTEEMEALLPQAPASFLVQKSPPRNTAWKRALRIFIMFDVLTVTGLLCYILFFGATFLFERVLLRMLGCRTTWDLREMREPFLNLEVEALLPS*