ENST00000347616.5 CNTN1

Information
Transcript ID
ENST00000347616.5
Genome
hg19
Position
chr12:41,302,156-41,466,208
Strand
+
CDS length
3,057
Amino acid length
1,019
Gene symbol
CNTN1
Gene type
protein-coding
Gene description
contactin 1
Gene Entrez Gene ID
1272
Variants

Display target variant


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Target data :
MGeND data only
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Variant name Gene AA change CDS Japanese
frequency		 TogoVar MGeND Genome ClinVar CIViC evidence DisGeNET entry COSMIC
occurrence		 Prediction
Entry Origin Type Annotation Entry Origin Annotation
Search Word
Target data :
MGeND data only
Category :
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Name MGeND Type Genome Size Chromosome Start Stop Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Search Word
Target data :
MGeND data only
Category :
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Name MGeND Type Genome Gene symbol Chromosome Genomic start Genomic stop Strand Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Exon
Exon number Start Stop
1 41,302,156 41,302,295
2 41,303,875 41,303,907
3 41,312,441 41,312,573
4 41,316,058 41,316,230
5 41,318,359 41,318,454
6 41,323,598 41,323,804
7 41,327,263 41,327,362
8 41,327,499 41,327,680
9 41,330,583 41,330,707
10 41,331,372 41,331,489
11 41,333,137 41,333,287
12 41,337,399 41,337,526
13 41,337,797 41,337,972
14 41,352,916 41,353,036
15 41,374,711 41,374,869
16 41,386,922 41,387,071
17 41,408,030 41,408,100
18 41,410,484 41,410,718
19 41,414,139 41,414,242
20 41,418,952 41,419,138
21 41,421,659 41,421,771
22 41,422,865 41,423,021
23 41,463,761 41,466,208
CDS
Exon number Type Start Stop
1 CDS 41,302,235 41,302,295
2 CDS 41,303,875 41,303,907
3 CDS 41,312,441 41,312,573
4 CDS 41,316,058 41,316,230
5 CDS 41,318,359 41,318,454
6 CDS 41,323,598 41,323,804
7 CDS 41,327,263 41,327,362
8 CDS 41,327,499 41,327,680
9 CDS 41,330,583 41,330,707
10 CDS 41,331,372 41,331,489
11 CDS 41,333,137 41,333,287
12 CDS 41,337,399 41,337,526
13 CDS 41,337,797 41,337,972
14 CDS 41,352,916 41,353,036
15 CDS 41,374,711 41,374,869
16 CDS 41,386,922 41,387,071
17 CDS 41,408,030 41,408,100
18 CDS 41,410,484 41,410,718
19 CDS 41,414,139 41,414,242
20 CDS 41,418,952 41,419,138
21 CDS 41,421,659 41,421,771
22 CDS 41,422,865 41,423,021
23 CDS 41,463,761 41,463,837
Other genome
Genome Chromosome Start End Links
hg38 chr12 40,908,354 41,072,406 Link
CDS sequence
ATGAAAATGTGGTTGCTGGTCAGTCATCTTGTGATAATATCTATTACTACCTGTTTAGCAGAGTTTACATGGTATAGAAGATATGGTCATGGAGTTTCTGAGGAAGACAAAGGATTTGGACCAATTTTTGAAGAGCAGCCAATCAATACCATTTATCCAGAGGAATCACTGGAAGGAAAAGTCTCACTCAACTGTAGGGCACGAGCCAGCCCTTTCCCGGTTTACAAATGGAGAATGAATAATGGGGACGTTGATCTCACAAGTGATCGATACAGTATGGTAGGAGGAAACCTTGTTATCAACAACCCTGACAAACAGAAAGATGCTGGAATATACTACTGTTTAGCATCTAATAACTACGGGATGGTCAGAAGCACTGAAGCAACCCTGAGCTTTGGATATCTTGATCCTTTCCCACCTGAGGAACGTCCTGAGGTCAGAGTAAAAGAAGGGAAAGGAATGGTGCTTCTCTGTGACCCCCCATACCATTTTCCAGATGATCTTAGCTATCGCTGGCTTCTAAATGAATTTCCTGTATTTATCACAATGGATAAACGGCGATTTGTGTCTCAGACAAATGGCAATCTCTACATTGCAAATGTTGAGGCTTCCGACAAAGGCAATTATTCCTGCTTTGTTTCCAGTCCTTCTATTACAAAGAGCGTGTTCAGCAAATTCATCCCACTCATTCCAATACCTGAACGAACAACAAAACCATATCCTGCTGATATTGTAGTTCAGTTCAAGGATGTATATGCATTGATGGGCCAAAATGTGACCTTAGAATGTTTTGCACTTGGAAATCCTGTTCCGGATATCCGATGGCGGAAGGTTCTAGAACCAATGCCAAGCACTGCTGAGATTAGCACCTCTGGGGCTGTTCTTAAGATCTTCAATATTCAGCTAGAAGATGAAGGCATCTATGAATGTGAGGCTGAGAACATTAGAGGAAAGGATAAACATCAAGCAAGAATTTATGTTCAAGCATTCCCTGAGTGGGTAGAACACATCAATGACACAGAGGTGGACATAGGCAGTGATCTCTACTGGCCTTGTGTGGCCACAGGAAAGCCCATCCCTACAATCCGATGGTTGAAAAATGGATATGCGTATCATAAAGGGGAATTAAGACTGTATGATGTGACTTTTGAAAATGCCGGAATGTATCAGTGCATAGCTGAAAACACATATGGAGCCATTTATGCAAATGCTGAGTTGAAGATCTTGGCGTTGGCTCCAACTTTTGAAATGAATCCTATGAAGAAAAAGATCCTGGCTGCTAAAGGTGGAAGGGTGATAATTGAATGCAAACCTAAAGCTGCACCGAAACCAAAGTTTTCATGGAGTAAAGGGACAGAGTGGCTTGTCAATAGCAGCAGAATACTCATTTGGGAAGATGGTAGCTTGGAAATCAACAACATTACAAGGAATGATGGAGGTATCTATACATGCTTTGCAGAAAATAACAGAGGGAAAGCTAATAGCACTGGAACCCTTGTTATCACAGATCCTACGCGAATTATATTGGCCCCAATTAATGCCGATATCACAGTTGGAGAAAACGCCACCATGCAGTGTGCTGCGTCCTTTGATCCTGCCTTGGATCTCACATTTGTTTGGTCCTTCAATGGCTATGTGATCGATTTTAACAAAGAGAATATTCACTACCAGAGGAATTTTATGCTGGATTCCAATGGGGAATTACTAATCCGAAATGCGCAGCTGAAACATGCTGGAAGATACACATGCACTGCCCAGACAATTGTGGACAATTCTTCAGCTTCAGCTGACCTTGTAGTGAGAGGCCCTCCAGGCCCTCCAGGTGGTCTGAGAATAGAAGACATTAGAGCCACTTCTGTGGCACTTACTTGGAGCCGTGGTTCAGACAATCATAGTCCTATTTCTAAATACACTATCCAGACCAAGACTATTCTTTCAGATGACTGGAAAGATGCAAAGACAGATCCCCCAATTATTGAAGGAAATATGGAGGCAGCAAGAGCAGTGGACTTAATCCCATGGATGGAGTATGAATTCCGCGTGGTAGCAACCAATACACTGGGTAGAGGAGAGCCCAGTATACCATCTAACAGAATTAAAACAGACGGTGCTGCACCAAATGTGGCTCCTTCAGATGTAGGAGGTGGAGGTGGAAGAAACAGAGAGCTGACCATAACATGGGCGCCTTTGTCAAGAGAATACCACTATGGCAACAATTTTGGTTACATAGTGGCATTTAAGCCATTTGATGGAGAAGAATGGAAAAAAGTCACAGTTACTAATCCTGATACTGGCCGATATGTCCATAAAGATGAAACCATGAGCCCTTCCACTGCATTTCAAGTTAAAGTCAAGGCCTTCAACAACAAAGGAGATGGACCTTACAGCCTAGTAGCAGTCATTAATTCAGCACAAGACGCTCCCAGTGAAGCCCCAACAGAAGTAGGTGTAAAAGTCTTATCATCTTCTGAGATATCTGTTCATTGGGAACATGTTTTAGAAAAAATAGTGGAAAGCTATCAGATTCGGTATTGGGCTGCCCATGACAAAGAAGAAGCTGCAAACAGAGTTCAAGTCACCAGCCAAGAGTACTCGGCCAGGCTCGAGAACCTTCTGCCAGACACCCAGTATTTTATAGAAGTCGGGGCCTGCAATAGTGCAGGGTGTGGACCTCCAAGTGACATGATTGAGGCTTTCACCAAGAAAGCACCTCCTAGCCAGCCTCCAAGGATCATCAGTTCAGTAAGGTCTGGTTCACGCTATATAATCACCTGGGATCATGTCGTTGCACTATCAAATGAATCTACAGTGACGGGATATAAGGTACTCTACAGACCTGATGGCCAGCATGATGGCAAGCTGTATTCAACTCACAAACACTCCATAGAAGTCCCAATCCCCAGAGATGGAGAATACGTTGTGGAGGTTCGCGCGCACAGTGATGGAGGAGATGGAGTGGTGTCTCAAGTCAAAATTTCAGGTGCACCCACCCTATCCCCAAGTCTTCTCGGCTTACTGCTGCCTGCCTTTGGCATCCTTGTCTACTTGGAATTCTGA
Amino sequence
MKMWLLVSHLVIISITTCLAEFTWYRRYGHGVSEEDKGFGPIFEEQPINTIYPEESLEGKVSLNCRARASPFPVYKWRMNNGDVDLTSDRYSMVGGNLVINNPDKQKDAGIYYCLASNNYGMVRSTEATLSFGYLDPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQAFPEWVEHINDTEVDIGSDLYWPCVATGKPIPTIRWLKNGYAYHKGELRLYDVTFENAGMYQCIAENTYGAIYANAELKILALAPTFEMNPMKKKILAAKGGRVIIECKPKAAPKPKFSWSKGTEWLVNSSRILIWEDGSLEINNITRNDGGIYTCFAENNRGKANSTGTLVITDPTRIILAPINADITVGENATMQCAASFDPALDLTFVWSFNGYVIDFNKENIHYQRNFMLDSNGELLIRNAQLKHAGRYTCTAQTIVDNSSASADLVVRGPPGPPGGLRIEDIRATSVALTWSRGSDNHSPISKYTIQTKTILSDDWKDAKTDPPIIEGNMEAARAVDLIPWMEYEFRVVATNTLGRGEPSIPSNRIKTDGAAPNVAPSDVGGGGGRNRELTITWAPLSREYHYGNNFGYIVAFKPFDGEEWKKVTVTNPDTGRYVHKDETMSPSTAFQVKVKAFNNKGDGPYSLVAVINSAQDAPSEAPTEVGVKVLSSSEISVHWEHVLEKIVESYQIRYWAAHDKEEAANRVQVTSQEYSARLENLLPDTQYFIEVGACNSAGCGPPSDMIEAFTKKAPPSQPPRIISSVRSGSRYIITWDHVVALSNESTVTGYKVLYRPDGQHDGKLYSTHKHSIEVPIPRDGEYVVEVRAHSDGGDGVVSQVKISGAPTLSPSLLGLLLPAFGILVYLEF*