ENST00000392924.2 SYCP3
Information
- Transcript ID
- ENST00000392924.2
- Genome
- hg19
- Position
- chr12:102,122,426-102,133,240
- Strand
- -
- CDS length
- 711
- Amino acid length
- 237
- Gene symbol
- SYCP3
- Gene type
- protein-coding
- Gene description
- synaptonemal complex protein 3
- Gene Entrez Gene ID
- 50511
Variants
Display target variant
Search Word
| Target data | : |
MGeND data only
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| Category | : |
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| Search word | : | |
| Filtering | : |
| Variant name | Gene | AA change | CDS | Japanese frequency |
TogoVar | MGeND | Genome | ClinVar | CIViC evidence | DisGeNET entry | COSMIC occurrence |
Prediction | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | Entry | Origin | Annotation | |||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
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| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Size | Chromosome | Start | Stop | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | ||||||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Gene symbol | Chromosome | Genomic start | Genomic stop | Strand | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | |||||||||||||||
Exon
| Exon number | Start | Stop |
|---|---|---|
| 9 | 102,122,426 | 102,122,758 |
| 8 | 102,122,887 | 102,122,991 |
| 7 | 102,125,346 | 102,125,444 |
| 6 | 102,127,353 | 102,127,452 |
| 5 | 102,128,705 | 102,128,822 |
| 4 | 102,130,815 | 102,130,849 |
| 3 | 102,131,010 | 102,131,076 |
| 2 | 102,131,581 | 102,131,730 |
| 1 | 102,133,129 | 102,133,240 |
CDS
| Exon number | Type | Start | Stop |
|---|---|---|---|
| 9 | CDS | 102,122,705 | 102,122,758 |
| 8 | CDS | 102,122,887 | 102,122,991 |
| 7 | CDS | 102,125,346 | 102,125,444 |
| 6 | CDS | 102,127,353 | 102,127,452 |
| 5 | CDS | 102,128,705 | 102,128,822 |
| 4 | CDS | 102,130,815 | 102,130,849 |
| 3 | CDS | 102,131,010 | 102,131,076 |
| 2 | CDS | 102,131,581 | 102,131,713 |
Other genome
| Genome | Chromosome | Start | End | Links |
|---|---|---|---|---|
| hg38 | chr12 | 101,728,648 | 101,739,462 | Link |
CDS sequence
ATGGTGTCCTCCGGAAAAAAGTATTCCAGGAAATCTGGGAAGCCGTCTGTGGAAGATCAGTTTACGAGAGCCTATGACTTTGAGACTGAAGATAAGAAAGATCTGAGTGGATCAGAGGAAGATGTTATTGAAGGGAAGACTGCAGTCATTGAGAAACGTAGGAAGAAAAGGTCTTCTGCAGGAGTAGTTGAAGATATGGGGGGTGAAGTGCAGAATATGCTGGAAGGAGTTGGAGTTGACATTAACAAGGCTCTTCTTGCCAAGAGAAAGAGACTAGAAATGTATACCAAGGCTTCTCTCAAAACTAGTAACCAGAAAATTGAACATGTTTGGAAAACACAACAAGATCAAAGGCAGAAGCTTAACCAAGAATATTCTCAGCAGTTTCTGACTTTGTTTCAGCAGTGGGATTTAGATATGCAGAAAGCTGAGGAACAAGAAGAAAAAATACTTAATATGTTTCGACAGCAACAAAAGATTCTTCAACAATCTAGAATTGTTCAGAGCCAGAGATTGAAAACAATTAAACAGTTATATGAGCAGTTCATAAAGAGTATGGAAGAGTTGGAGAAGAATCATGATAATCTACTTACTGGTGCACAAAATGAATTTAAAAAAGAAATGGCTATGTTGCAAAAAAAAATTATGATGGAAACTCAGCAGCAAGAGATAGCAAGTGTTCGGAAGTCTCTTCAATCCATGTTATTCTGA
Amino sequence
MVSSGKKYSRKSGKPSVEDQFTRAYDFETEDKKDLSGSEEDVIEGKTAVIEKRRKKRSSAGVVEDMGGEVQNMLEGVGVDINKALLAKRKRLEMYTKASLKTSNQKIEHVWKTQQDQRQKLNQEYSQQFLTLFQQWDLDMQKAEEQEEKILNMFRQQQKILQQSRIVQSQRLKTIKQLYEQFIKSMEELEKNHDNLLTGAQNEFKKEMAMLQKKIMMETQQQEIASVRKSLQSMLF*