ENST00000339777.5 LRRC43
Information
- Transcript ID
- ENST00000339777.5
- Genome
- hg19
- Position
- chr12:122,667,670-122,688,018
- Strand
- +
- CDS length
- 1,971
- Amino acid length
- 657
- Gene symbol
- LRRC43
- Gene type
- protein-coding
- Gene description
- leucine rich repeat containing 43
- Gene Entrez Gene ID
- 254050
Variants
Display target variant
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Variant name | Gene | AA change | CDS | Japanese frequency |
TogoVar | MGeND | Genome | ClinVar | CIViC evidence | DisGeNET entry | COSMIC occurrence |
Prediction | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | Entry | Origin | Annotation | |||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Size | Chromosome | Start | Stop | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | ||||||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Gene symbol | Chromosome | Genomic start | Genomic stop | Strand | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | |||||||||||||||
Exon
| Exon number | Start | Stop |
|---|---|---|
| 1 | 122,667,670 | 122,667,841 |
| 2 | 122,669,066 | 122,669,326 |
| 3 | 122,670,737 | 122,670,847 |
| 4 | 122,672,248 | 122,672,387 |
| 5 | 122,674,677 | 122,674,915 |
| 6 | 122,675,927 | 122,676,114 |
| 7 | 122,677,292 | 122,677,551 |
| 8 | 122,684,736 | 122,684,877 |
| 9 | 122,685,079 | 122,685,207 |
| 10 | 122,685,293 | 122,685,481 |
| 11 | 122,685,843 | 122,685,876 |
| 12 | 122,687,862 | 122,688,018 |
CDS
| Exon number | Type | Start | Stop |
|---|---|---|---|
| 1 | CDS | 122,667,692 | 122,667,841 |
| 2 | CDS | 122,669,066 | 122,669,326 |
| 3 | CDS | 122,670,737 | 122,670,847 |
| 4 | CDS | 122,672,248 | 122,672,387 |
| 5 | CDS | 122,674,677 | 122,674,915 |
| 6 | CDS | 122,675,927 | 122,676,114 |
| 7 | CDS | 122,677,292 | 122,677,551 |
| 8 | CDS | 122,684,736 | 122,684,877 |
| 9 | CDS | 122,685,079 | 122,685,207 |
| 10 | CDS | 122,685,293 | 122,685,481 |
| 11 | CDS | 122,685,843 | 122,685,876 |
| 12 | CDS | 122,687,862 | 122,687,989 |
Other genome
| Genome | Chromosome | Start | End | Links |
|---|---|---|---|---|
| hg38 | chr12 | 122,183,123 | 122,203,471 | Link |
CDS sequence
ATGGAGGCGTCGTACGAGTCCGAGTCCGAGTCCGAGTCTGAGGCCGGGCCTGGGACTCAGCGGCCCGGGACCGGGACCGTGAGCGCGGCCGTGCGCGAGCACTTGCGGAAGCTGTGTCTGCGCGAGTTCCCGTGCGGTGCCGGCAGCTGGAATAAGTCGCGCTTTCTTCCTCAAACTTGGCGAACTTGGAGGGAGCTTGTCCCCAGAGAGGAGGATGTGGTGAGCCCCGGAGAGGAGACGGTGGAGGCCCTGCTGGGCCTGGTCCGCAGCCGCCACTCCCCCTGGGCTCTGCTGAACAACTCGAATGCAGAAGACAGTTTCCTGAGAGAATTGGCCATCCGGAACCCGCTGACGATCACAGACACCTTCTTCTACTCCTACTTCCGGTCCCTGCGGGTAATAGACAAGAAGGTCACCCTGGTGGATAAAGACCTCCTGAAATTTCTAAAGCTGGAGGAGTTGGTACTGAGCGCCAATCGAATCAAGGAGGTGGATGCCACCAATCTGCCCCCCACACTCAAGGTGCTGGAGCTCTACGGCAATGAGATCAGCAGCATGGAGTGTCTGTGTGCCCACCCACCCGCCGGCCTGCAGCACTTGGGGTTAGGCCACAACAAACTTCTAGGCCCCTTGGAAAGTCTCTACGTCACCGCTAATCACTGGCCCAACCTCGTCTCCCTGGACCTGGGCTTCAACGACCTGACAGACCTGCAGAGCATGGTCACCAGCCTGAGGACCCTCCGGCACCTGCGACTCCTGGTGCTGCAGGGAAACCCACTGGCCTTGGTGCCCTACTACCGCGGCCTCACCATCGACAGCCTGGCCCAGCTCTGCGTGCTGGACGACATCACCGTGTCTCCCAATGAGAAGCATCTCTTCCGGGGGCTCAGCCTCAATGGCGATCTCTTGGCACAGGAGGCGCAGTTTGTGGTGACCATCGGAAACATCAGAGGAGTCCTGGACACCTCTGTCTTAGACCCGGAACCCAGGCCCGAAGGCCCTTTCATCACTTACAACTATTACGTGACCTATGATTTTGTGAAAGATGAAGAAGGCGAAATGAATGAGTCCGCGGGCGTCCTGGCCGAGATCGTCAAGCCCTCTCCCAGCTTAGAATTATTAGTTGAGGAATCTCCTGAAGAGGTCGTGGAAGACGTCATCGAAGACATTGTTGAAGAGGTTACTGAAGAGGTCGAAGGGTCTCTGGAGTCTGAGGTGGAGGAGTCAGGAGAGTCGGAGCTGTCTGTCATCTCGGGGCCTTCGACCATCTTGCAGATGCCGAGGGCCTCTGCAGAAGAGCTGGCCAAGTTGAGGCTGCGTATAGATCCCCGGCTCTGCCCGTCCCCAGGGACTGTCCTCTTCAGCACTGCCCACAAGCCCTGGGCTGAGGTCATCCCCTGCAGTTACGAGATGCAGCACTCTCTCAGGGACCTGGTCCCACTGAAGGCCTTCCTGCTGGCGGGGACCACCGTGACCATCGTGGAGGAGAAGATTCTCTCCTGGCCTGTGGTGCTACCTGCTGTTGACAGTCCCCTGTCTGCCAAGAAAGGAAAGGGGGAGAAAGACAAGAAAGGGAAGGAGAAAGACAGGACGGGGAAAGGAGAGAAAGAGCCGGCCAAGGAGTGGAAGGTGCTGAAGAAGAAGAAAGAGCCGCCCAAGGAGCTCCGGCAGGACCCCCCCATCCTCCAGGTGCTGGGCCGGGGCCTGGTGATCCTGGAGCCCCTGCTCGCCGGGGAGCCCCTGGTGTCCACCGTGTGCAACTTCGGCGTGGTCCGCACATTGACATCTGACAGGCTGACGTTGGCCAGGGATTCAAAGAAGATTAAGAAAGTTGCCAAAAAAGAAAAGCCGAAAGCCGTGATTCCGATCTACGAAGGCGATTACCACCCTGAGCCCCTGACCGTAGAGGTGCAGATCCAGCTGAACCAGTGCCGCTCGGCGGAGGAGGCTCTGCGCATGTTCGCCGTGTAG
Amino sequence
MEASYESESESESEAGPGTQRPGTGTVSAAVREHLRKLCLREFPCGAGSWNKSRFLPQTWRTWRELVPREEDVVSPGEETVEALLGLVRSRHSPWALLNNSNAEDSFLRELAIRNPLTITDTFFYSYFRSLRVIDKKVTLVDKDLLKFLKLEELVLSANRIKEVDATNLPPTLKVLELYGNEISSMECLCAHPPAGLQHLGLGHNKLLGPLESLYVTANHWPNLVSLDLGFNDLTDLQSMVTSLRTLRHLRLLVLQGNPLALVPYYRGLTIDSLAQLCVLDDITVSPNEKHLFRGLSLNGDLLAQEAQFVVTIGNIRGVLDTSVLDPEPRPEGPFITYNYYVTYDFVKDEEGEMNESAGVLAEIVKPSPSLELLVEESPEEVVEDVIEDIVEEVTEEVEGSLESEVEESGESELSVISGPSTILQMPRASAEELAKLRLRIDPRLCPSPGTVLFSTAHKPWAEVIPCSYEMQHSLRDLVPLKAFLLAGTTVTIVEEKILSWPVVLPAVDSPLSAKKGKGEKDKKGKEKDRTGKGEKEPAKEWKVLKKKKEPPKELRQDPPILQVLGRGLVILEPLLAGEPLVSTVCNFGVVRTLTSDRLTLARDSKKIKKVAKKEKPKAVIPIYEGDYHPEPLTVEVQIQLNQCRSAEEALRMFAV*