ENST00000311191.10 LRCH1

Information
Transcript ID
ENST00000311191.10
Genome
hg19
Position
chr13:47,127,303-47,327,175
Strand
+
CDS length
2,091
Amino acid length
697
Gene symbol
LRCH1
Gene type
protein-coding
Gene description
leucine rich repeats and calponin homology domain containing 1
Gene Entrez Gene ID
23143
Variants

Display target variant


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Target data :
MGeND data only
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Variant name Gene AA change CDS Japanese
frequency		 TogoVar MGeND Genome ClinVar CIViC evidence DisGeNET entry COSMIC
occurrence		 Prediction
Entry Origin Type Annotation Entry Origin Annotation
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Target data :
MGeND data only
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Name MGeND Type Genome Size Chromosome Start Stop Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
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Target data :
MGeND data only
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Name MGeND Type Genome Gene symbol Chromosome Genomic start Genomic stop Strand Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Exon
Exon number Start Stop
1 47,127,303 47,127,838
2 47,224,336 47,224,480
3 47,243,165 47,243,291
4 47,255,876 47,255,981
5 47,260,040 47,260,176
6 47,261,987 47,262,114
7 47,263,268 47,263,331
8 47,266,671 47,266,776
9 47,269,028 47,269,152
10 47,273,471 47,273,538
11 47,275,256 47,275,342
12 47,279,203 47,279,292
13 47,279,403 47,279,439
14 47,285,926 47,285,979
15 47,286,660 47,286,732
16 47,297,356 47,297,465
17 47,302,982 47,303,119
18 47,308,056 47,308,133
19 47,324,675 47,327,175
CDS
Exon number Type Start Stop
1 CDS 47,127,532 47,127,838
2 CDS 47,224,336 47,224,480
3 CDS 47,243,165 47,243,291
4 CDS 47,255,876 47,255,981
5 CDS 47,260,040 47,260,176
6 CDS 47,261,987 47,262,114
7 CDS 47,263,268 47,263,331
8 CDS 47,266,671 47,266,776
9 CDS 47,269,028 47,269,152
10 CDS 47,273,471 47,273,538
11 CDS 47,275,256 47,275,342
12 CDS 47,279,203 47,279,292
13 CDS 47,279,403 47,279,439
14 CDS 47,285,926 47,285,979
15 CDS 47,286,660 47,286,732
16 CDS 47,297,356 47,297,465
17 CDS 47,302,982 47,303,119
18 CDS 47,308,056 47,308,133
19 CDS 47,324,675 47,324,785
Other genome
Genome Chromosome Start End Links
hg38 chr13 46,553,168 46,753,040 Link
CDS sequence
ATGGCGACGCCGGGAAGCGAACCCCAACCTTTCGTCCCGGCCCTTTCGGTAGCTACTCTGCACCCACTTCATCATCCCCACCACCACCACCACCACCATCAGCACCACGGAGGAACCGGCGCCCCCGGCGGGGCGGGTGGTGGCGGCGGTGGCAGCGGGGGCTTCAACCTGCCCTTGAACCGGGGTCTGGAGCGCGCGCTTGAGGAGGCGGCCAACTCCGGGGGGCTGAACCTGAGCGCCAGGAAATTGAAGGAATTTCCCCGTACCGCAGCCCCCGGGCACGACCTCTCGGACACGGTGCAGGCAGACTTATCTAAAAACAGACTGGTTGAAGTTCCAATGGAATTGTGCCATTTTGTATCACTGGAAATTCTTAATCTGTATCACAACTGTATCAGAGTCATTCCTGAGGCCATCGTTAATCTGCAGATGCTGACTTACCTGAACTTGAGTCGAAATCAGCTGTCCGCCCTGCCTGCCTGCCTGTGTGGTCTGCCTCTCAAAGTCTTAATCGCAAGTAACAACAAACTTGGATCATTACCAGAAGAGATAGGTCAGCTCAAACAGTTAATGGAGCTGGATGTCAGCTGCAACGAGATCACAGCGTTGCCCCAGCAGATAGGTCAGTTGAAATCTCTACGAGAACTGAATGTCAGAAGAAATTACCTTAAAGTTTTACCACAAGAACTAGTAGATCTTTCCTTGGTAAAGTTTGACTTTTCCTGCAACAAAGTGCTCGTGATTCCAATTTGTTTTAGAGAGATGAAGCAGCTGCAAGTGTTACTACTTGAGAATAACCCTCTGCAGTCTCCTCCAGCACAGATTTGCACAAAGGGCAAAGTTCACATATTTAAGTATCTGAGCATACAAGCATGCCAGATTAAGACAGCTGACTCCCTTTATCTCCACACCATGGAGAGGCCACATTTACACCAGCACGTGGAAGATGGCAAGAAGGATTCTGATTCGGGAGTTGGAAGTGATAATGGAGATAAGCGATTATCTGCCACCGAGCCTTCTGACGAAGACACTGTTAGCCTCAATGTGCCAATGTCAAACATCATGGAAGAAGAACAGATCATCAAGGAGGACTCGTGCCATCGCCTTAGCCCCGTTAAAGGGGAATTTCATCAGGAATTTCAACCGGAGCCTTCCCTTTTGGGTGACAGCACCAACTCAGGAGAAGAAAGAGACCAGTTTACTGATAGAGCAGATGGTCTCCATTCGGAATTTATGAACTATAAGGCAAGGGCAGAAGACTGTGAAGAGCTGTTACGGATAGAAGAGGATGTGCACTGGCAAACTGAGGGCATAATAAGTTCATCCAAAGATCAGGACATGGATATAGCAATGATCGAGCAGCTGAGAGAAGCAGTAGATTTGCTGCAAGATCCCAATGGATTAAGCACAGATATTACAGAGAGAAGTGTTTTAAACCTATATCCTATGGGATCAGCAGAAGCCTTAGAATTACAAGATTCTGCACTGAATGGTCAAATACAGCTGGAGACATCTCCGGTGTGTGAGGTGCAAAGTGATCTAACATTACAGAGTAACGGGAGCCAGTATTCTCCAAATGAGATTAGAGAGAACTCCCCTGCAGTCTCTCCTACCACAAACAGCACAGCTCCATTTGGCCTGAAGCCTCGATCAGTGTTTCTAAGACCTCAGAGAAATTTGGAATCTATAGACCCGCAGTTTACAATCCGGAGGAAAATGGAGCAGATGAGAGAAGAGAAAGAGCTGGTGGAACAACTTCGTGAGAGCATTGAGATGAGATTGAAGGTCAGTCTACACGAAGACCTGGGGGCAGCCCTCATGGATGGTGTCGTCCTCTGCCATCTGGTCAACCACATCCGCCCACGGTCGGTTGCAAGCATCCATGTCCCATCACCAGCGGTTCCCAAACTTAGCATGGCCAAATGCAGAAGAAATGTGGAAAACTTTTTGGAAGCATGCCGAAAATTAGGAGTACCAGAGGAAAAGCTATGTCTCCCCCACCACATCCTTGAAGAAAAAGGCCTGGTCAAAGTGGGCATTACCATTCAAGCATTACTAGACATCACCGTAACGAAGGCTCTGTTCACATGA
Amino sequence
MATPGSEPQPFVPALSVATLHPLHHPHHHHHHHQHHGGTGAPGGAGGGGGGSGGFNLPLNRGLERALEEAANSGGLNLSARKLKEFPRTAAPGHDLSDTVQADLSKNRLVEVPMELCHFVSLEILNLYHNCIRVIPEAIVNLQMLTYLNLSRNQLSALPACLCGLPLKVLIASNNKLGSLPEEIGQLKQLMELDVSCNEITALPQQIGQLKSLRELNVRRNYLKVLPQELVDLSLVKFDFSCNKVLVIPICFREMKQLQVLLLENNPLQSPPAQICTKGKVHIFKYLSIQACQIKTADSLYLHTMERPHLHQHVEDGKKDSDSGVGSDNGDKRLSATEPSDEDTVSLNVPMSNIMEEEQIIKEDSCHRLSPVKGEFHQEFQPEPSLLGDSTNSGEERDQFTDRADGLHSEFMNYKARAEDCEELLRIEEDVHWQTEGIISSSKDQDMDIAMIEQLREAVDLLQDPNGLSTDITERSVLNLYPMGSAEALELQDSALNGQIQLETSPVCEVQSDLTLQSNGSQYSPNEIRENSPAVSPTTNSTAPFGLKPRSVFLRPQRNLESIDPQFTIRRKMEQMREEKELVEQLRESIEMRLKVSLHEDLGAALMDGVVLCHLVNHIRPRSVASIHVPSPAVPKLSMAKCRRNVENFLEACRKLGVPEEKLCLPHHILEEKGLVKVGITIQALLDITVTKALFT*