ENST00000375299.8 UPF3A

Information
Transcript ID
ENST00000375299.8
Genome
hg19
Position
chr13:115,047,076-115,071,292
Strand
+
CDS length
1,431
Amino acid length
477
Gene symbol
UPF3A
Gene type
protein-coding
Gene description
UPF3A regulator of nonsense mediated mRNA decay
Gene Entrez Gene ID
65110
Variants

Display target variant


Search Word
Target data :
MGeND data only
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Variant name Gene AA change CDS Japanese
frequency		 TogoVar MGeND Genome ClinVar CIViC evidence DisGeNET entry COSMIC
occurrence		 Prediction
Entry Origin Type Annotation Entry Origin Annotation
Search Word
Target data :
MGeND data only
Category :
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Name MGeND Type Genome Size Chromosome Start Stop Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Search Word
Target data :
MGeND data only
Category :
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Name MGeND Type Genome Gene symbol Chromosome Genomic start Genomic stop Strand Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Exon
Exon number Start Stop
1 115,047,076 115,047,321
2 115,047,496 115,047,602
3 115,048,312 115,048,418
4 115,051,777 115,051,875
5 115,051,994 115,052,104
6 115,056,964 115,057,019
7 115,057,109 115,057,267
8 115,064,315 115,064,475
9 115,067,206 115,067,500
10 115,070,264 115,071,292
CDS
Exon number Type Start Stop
1 CDS 115,047,115 115,047,321
2 CDS 115,047,496 115,047,602
3 CDS 115,048,312 115,048,418
4 CDS 115,051,777 115,051,875
5 CDS 115,051,994 115,052,104
6 CDS 115,056,964 115,057,019
7 CDS 115,057,109 115,057,267
8 CDS 115,064,315 115,064,475
9 CDS 115,067,206 115,067,500
10 CDS 115,070,264 115,070,392
Other genome
Genome Chromosome Start End Links
hg38 chr13 114,281,601 114,305,817 Link
CDS sequence
ATGCGCTCGGAAAAGGAGGGGGCCGGAGGCCTTCGGGCGGCCGTTGCCGCGCGGGGCCCGAGCGGGAGGGAGAAGCTGTCGGCCCTAGAAGTGCAGTTCCACCGCGACTCGCAGCAGCAGGAGGCTGAGACGCCGCCAACTTCGTCCTCCGGTTGCGGGGGCGGTGCGGGCAAACCTCGCGAGGAGAAGAGGACGGCCCTGAGCAAGGTGGTCATCCGCCGCCTGCCTCCGGGCCTCACCAAGGAGCAGCTGGAGGAGCAGCTGCGCCCGCTGCCAGCACACGACTACTTCGAGTTCTTCGCCGCCGACCTGAGTCTTTATCCTCATCTCTACTCAAGAGCATACATTAATTTTAGGAATCCTGATGACATCCTTCTTTTTAGAGATCGTTTTGATGGATATATCTTCCTTGACAGCAAAGGCCTAGAATATCCTGCAGTGGTAGAGTTTGCTCCATTCCAGAAGATAGCCAAAAAGAAGCTGAGAAAAAAAGATGCCAAGACTGGAAGCATCGAAGATGATCCAGAATATAAGAAGTTTTTAGAAACCTACTGTGTGGAGGAAGAGAAGACCAGTGCCAACCCTGAGACTCTGCTGGGGGAGATGGAGGCGAAGACAAGAGAGCTCATTGCTAGAAGAACCACACCTCTTTTGGAATATATTAAAAATAGAAAATTAGAAAAGCAGAGAATTCGAGAAGAGAAGCGAGAAGAACGGAGGAGGAGAGAGTTAGAAAAGAAACGTTTGCGGGAAGAGGAAAAAAGAAGAAGAAGAGAAGAAGAAAGATGCAAAAAAAAAGAGACAGATAAACAGAAGAAAATTGCAGAGAAAGAAGTAAGGATTAAGCTTCTTAAGAAACCAGAAAAGGGAGAGGAACCAACCACAGAGAAACCAAAAGAAAGAGGAGAGGAGATTGATACTGGAGGTGGCAAGCAGGAATCCTGTGCCCCCGGTGCAGTCGTAAAAGCCAGGCCCATGGAAGGCTCGCTGGAGGAGCCCCAGGAGACGTCACACAGCGGCAGTGATAAAGAGCACAGGGATGTGGAGAGATCTCAAGAACAAGAATCTGAAGCACAAAGATACCATGTGGATGACGGCAGGAGGCACAGAGCTCACCACGAGCCTGAACGGCTTTCCAGAAGGAGTGAGGATGAGCAGAGATGGGGGAAAGGACCTGGCCAAGACAGAGGGAAGAAGGGGAGCCAGGACAGCGGGGCTCCGGGGGAGGCCATGGAGAGACTGGGAAGAGCGCAGAGGTGTGACGACAGTCCAGCACCCAGAAAAGAGCGACTGGCAAACAAGGACCGGCCAGCCTTGCAGCTGTATGATCCAGGAGCTCGCTTCCGAGCGCGAGAGTGTGGCGGAAACAGGAGGATCTGCAAGGCAGAAGGTTCGGGGACTGGTCCTGAGAAGAGGGAAGAGGCAGAGTGA
Amino sequence
MRSEKEGAGGLRAAVAARGPSGREKLSALEVQFHRDSQQQEAETPPTSSSGCGGGAGKPREEKRTALSKVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPAVVEFAPFQKIAKKKLRKKDAKTGSIEDDPEYKKFLETYCVEEEKTSANPETLLGEMEAKTRELIARRTTPLLEYIKNRKLEKQRIREEKREERRRRELEKKRLREEEKRRRREEERCKKKETDKQKKIAEKEVRIKLLKKPEKGEEPTTEKPKERGEEIDTGGGKQESCAPGAVVKARPMEGSLEEPQETSHSGSDKEHRDVERSQEQESEAQRYHVDDGRRHRAHHEPERLSRRSEDEQRWGKGPGQDRGKKGSQDSGAPGEAMERLGRAQRCDDSPAPRKERLANKDRPALQLYDPGARFRARECGGNRRICKAEGSGTGPEKREEAE*