ENST00000571272.5 SCARF1

Information
Transcript ID
ENST00000571272.5
Genome
hg19
Position
chr17:1,537,684-1,549,038
Strand
-
CDS length
1,710
Amino acid length
570
Gene symbol
SCARF1
Gene type
protein-coding
Gene description
scavenger receptor class F member 1
Gene Entrez Gene ID
8578
Variants

Display target variant


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Target data :
MGeND data only
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Variant name Gene AA change CDS Japanese
frequency		 TogoVar MGeND Genome ClinVar CIViC evidence DisGeNET entry COSMIC
occurrence		 Prediction
Entry Origin Type Annotation Entry Origin Annotation
Search Word
Target data :
MGeND data only
Category :
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Name MGeND Type Genome Size Chromosome Start Stop Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Search Word
Target data :
MGeND data only
Category :
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Name MGeND Type Genome Gene symbol Chromosome Genomic start Genomic stop Strand Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Exon
Exon number Start Stop
11 1,537,684 1,538,911
10 1,540,003 1,540,112
9 1,540,235 1,540,356
8 1,542,100 1,542,220
7 1,542,933 1,543,036
6 1,543,206 1,543,334
5 1,543,742 1,543,960
4 1,546,736 1,547,261
3 1,548,128 1,548,229
2 1,548,472 1,548,533
1 1,548,891 1,549,038
CDS
Exon number Type Start Stop
11 CDS 1,538,798 1,538,911
10 CDS 1,540,003 1,540,112
9 CDS 1,540,235 1,540,356
8 CDS 1,542,100 1,542,220
7 CDS 1,542,933 1,543,036
6 CDS 1,543,206 1,543,334
5 CDS 1,543,742 1,543,960
4 CDS 1,546,736 1,547,261
3 CDS 1,548,128 1,548,229
2 CDS 1,548,472 1,548,533
1 CDS 1,548,891 1,548,991
Other genome
Genome Chromosome Start End Links
hg38 chr17 1,634,390 1,645,744 Link
CDS sequence
ATGGGGCTGGGGCTGCTGCTCCCGCTGCTGCTGCTCTGGACTCGGGGGACTCAGGGGTCCGAGCTGGACCCCAAAGGGCAGCACGTCTGTGTGGCCAGCAGCCCCTCTGCTGAGCTGCAGTGCTGCGCAGGCTGGAGGCAGAAGGATCAAGAATGCACCATCCCCATCTGTGAGGGGCCGGACGCCTGCCAGAAAGACGAGGTGTGTGTGAAGCCGGGCCTCTGTCGATGCAAGCCTGGATTCTTTGGGGCCCACTGCAGCTCCCGCTGCCCGGGCCAGTACTGGGGCCCCGACTGCCGTGAGAGCTGCCCCTGCCACCCGCACGGCCAGTGCGAGCCAGCCACGGGCGCGTGCCAGTGCCAGGCCGACCGCTGGGGAGCCCGCTGCGAGTTCCCGTGCGCCTGCGGCCCCCACGGGCGCTGCGACCCCGCGACCGGCGTGTGCCACTGCGAACCCGGCTGGTGGTCGTCCACGTGCCGCCGCCCGTGCCAGTGCAACACCGCGGCGGCGCGCTGCGAGCAGGCCACGGGCGCCTGCGTGTGCAAGCCGGGCTGGTGGGGGCGCCGCTGCAGCTTCCGCTGCAACTGCCACGGCTCCCCGTGCGAGCAGGACTCCGGCCGCTGCGCCTGCCGGCCGGGCTGGTGGGGTCCCGAATGCCAGCAGCAGTGCGAGTGTGTGCGGGGCCGCTGCAGCGCCGCCTCCGGCGAGTGCACCTGCCCGCCCGGCTTCCGCGGAGCGCGCTGCGAGCTGCCCTGCCCGGCAGGCAGCCACGGGGTGCAGTGCGCACACAGCTGTGGCCGCTGCAAACACAATGAGCCGTGCTCTCCAGACACAGGCAGCTGTGAGTCCTGCGAGCCGGGCTGGAACGGGACCCAGTGCCAGCAGCCCTGCCTGCCTGGCACCTTTGGCGAGAGCTGCGAACAGCAGTGCCCTCACTGCCGACATGGGGAGGCCTGTGAGCCAGATACTGGCCACTGTCAGCGCTGTGACCCTGGCTGGCTGGGGCCCAGGTGTGAAGACCCCTGCCCCACTGGTACCTTTGGGGAAGACTGTGGCTCTACCTGCCCCACCTGTGTTCAGGGGTCCTGTGATACTGTGACAGGGGACTGTGTCTGCAGTGCCGGCTACTGGGGGCCCAGCTGCAACGCCTCCTGCCCAGCCGGTTTCCATGGAAACAACTGCTCAGTTCCTTGTGAATGCCCAGAGGGACTCTGCCACCCTGTCTCTGGGTCCTGCCAGCCAGGCTCTGGCAGTCGGGACACTGCCCTCATCGCGGGCAGCCTTGTGCCTCTGCTGCTGCTCTTCCTGGGCCTTGCCTGCTGTGCCTGCTGCTGCTGGGCCCCCCGATCAGACCTCAAGGACAGGCCAGCGAGAGATGGAGCTACCGTGTCCAGGATGAAGCTGCAGGTCTGGGGGACACTGACCAGCTTGGGCTCCACGCTGCCCTGCCGTTCCCTCAGCTCCCACAAGCTACCCTGGGTGACAGCTTCATCGAGCCGCCCTCTGCCGGCTGGGCCACTGATGACTCCTTCTCATCCGATCCTGAGTCTGGAGAGGCAGATGAGGTTCCTGCCTACTGTGTGCCACCCCAAGAAGGGATGGTCCCTGTGGCCCAGGCAGGGTCGTCAGAGGCCAGCCTGGCTGCAGGTGCTTTCCCGCCCCCTGAGGACGCCTCCACGCCATTCGCCATCCCGCGCACCTCCAGCCTAG
Amino sequence
MGLGLLLPLLLLWTRGTQGSELDPKGQHVCVASSPSAELQCCAGWRQKDQECTIPICEGPDACQKDEVCVKPGLCRCKPGFFGAHCSSRCPGQYWGPDCRESCPCHPHGQCEPATGACQCQADRWGARCEFPCACGPHGRCDPATGVCHCEPGWWSSTCRRPCQCNTAAARCEQATGACVCKPGWWGRRCSFRCNCHGSPCEQDSGRCACRPGWWGPECQQQCECVRGRCSAASGECTCPPGFRGARCELPCPAGSHGVQCAHSCGRCKHNEPCSPDTGSCESCEPGWNGTQCQQPCLPGTFGESCEQQCPHCRHGEACEPDTGHCQRCDPGWLGPRCEDPCPTGTFGEDCGSTCPTCVQGSCDTVTGDCVCSAGYWGPSCNASCPAGFHGNNCSVPCECPEGLCHPVSGSCQPGSGSRDTALIAGSLVPLLLLFLGLACCACCCWAPRSDLKDRPARDGATVSRMKLQVWGTLTSLGSTLPCRSLSSHKLPWVTASSSRPLPAGPLMTPSHPILSLERQMRFLPTVCHPKKGWSLWPRQGRQRPAWLQVLSRPLRTPPRHSPSRAPPA*