ENST00000225519.5 SHPK
Information
- Transcript ID
- ENST00000225519.5
- Genome
- hg19
- Position
- chr17:3,511,534-3,539,544
- Strand
- -
- CDS length
- 1,437
- Amino acid length
- 479
- Gene symbol
- SHPK
- Gene type
- protein-coding
- Gene description
- sedoheptulokinase
- Gene Entrez Gene ID
- 23729
Variants
Display target variant
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
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| Search word | : | |
| Filtering | : |
| Variant name | Gene | AA change | CDS | Japanese frequency |
TogoVar | MGeND | Genome | ClinVar | CIViC evidence | DisGeNET entry | COSMIC occurrence |
Prediction | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | Entry | Origin | Annotation | |||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Size | Chromosome | Start | Stop | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | ||||||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Gene symbol | Chromosome | Genomic start | Genomic stop | Strand | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | |||||||||||||||
Exon
| Exon number | Start | Stop |
|---|---|---|
| 7 | 3,511,534 | 3,514,266 |
| 6 | 3,518,631 | 3,518,831 |
| 5 | 3,524,531 | 3,524,706 |
| 4 | 3,526,633 | 3,526,785 |
| 3 | 3,527,342 | 3,527,525 |
| 2 | 3,533,499 | 3,533,640 |
| 1 | 3,539,346 | 3,539,544 |
CDS
| Exon number | Type | Start | Stop |
|---|---|---|---|
| 7 | CDS | 3,513,854 | 3,514,266 |
| 6 | CDS | 3,518,631 | 3,518,831 |
| 5 | CDS | 3,524,531 | 3,524,706 |
| 4 | CDS | 3,526,633 | 3,526,785 |
| 3 | CDS | 3,527,342 | 3,527,525 |
| 2 | CDS | 3,533,499 | 3,533,640 |
| 1 | CDS | 3,539,346 | 3,539,513 |
Other genome
| Genome | Chromosome | Start | End | Links |
|---|---|---|---|---|
| hg38 | chr17 | 3,608,240 | 3,636,250 | Link |
CDS sequence
ATGGCTGCGCGGCCGATCACCCTCGGCATTGACCTGGGCACCACATCTGTGAAGGCAGCTCTGCTGAGGGCCGCGCCCGACGACCCATCCGGGTTCGCAGTGCTGGCGAGCTGTGCCCGTGCTGCGCGGGCAGAGGCGGCGGTCGAGAGCGCGGTGGCCGGGCCCCAGGGGCGGGAGCAGGATGTGAGTAGAATCCTCCAAGCCCTACACGAGTGCCTTGCTGCCCTTCCCCGACCCCAGCTCCGGAGCGTCGTGGGCATCGGGGTGTCGGGCCAGATGCATGGAGTCGTGTTTTGGAAAACAGGCCAAGGCTGTGAATGGACAGAGGGAGGGATTACCCCGGTGTTCGAGCCCCGAGCTGTTAGCCACCTGGTCACGTGGCAGGATGGCCGATGTAGCAGCGAATTCCTGGCCTCTCTGCCCCAGCCGAAGTCTCATCTCAGTGTGGCCACGGGCTTCGGCTGTGCAACCATCTTCTGGCTTTTGAAATATCGCCCAGAGTTCCTGAAGTCCTACGACGCAGCCGGTACCATCCACGACTATGTGGTTGCCATGCTGTGTGGCTTGCCAAGACCTCTGATGTCCGACCAGAATGCTGCCAGCTGGGGCTATTTCAACACGCAGAGCCAAAGCTGGAACGTAGAGACACTGAGGAGCTCGGGTTTTCCTGTCCACCTGCTCCCAGACATCGCCGAGCCTGGCAGTGTGGCGGGCAGAACTTCCCACATGTGGTTTGAAATCCCAAAGGGGACGCAGGTGGGAGTGGCCTTGGGTGATTTACAGGCCTCTGTCTATTCCTGCATGGCCCAGAGGACAGATGCAGTTCTCAACATCAGCACCTCGGTTCAGCTGGCAGCCTCCATGCCTTCAGGATTCCAGCCTGCACAGACTCCAGACCCTACGGCCCCAGTCGCCTACTTCCCATACTTCAACAGGACCTACCTGGGGGTGGCCGCGTCACTCAACGGGGGCAATGTGCTGGCCACGTTCGTCCACATGCTGGTTCAGTGGATGGCAGATCTAGGCCTGGAGGTTGAAGAATCCACTGTGTATTCACGCATGATTCAGGCAGCTGTGCAGCAGAGAGATACCCACCTGACCATCACCCCGACAGTGCTGGGGGAGAGGCACCTGCCGGACCAGCTGGCCTCAGTGACCAGAATCTCCTCCTCCGACCTCTCCCTGGGGCACGTGACCCGGGCTCTGTGCCGAGGCATTGTTCAGAACCTGCACTCCATGCTTCCGATTCAGCAGCTCCAGGACTGGGGCGTGGAGAGGGTGATGGGCAGTGGGAGTGCGCTGTCCAGGAATGACGTGCTGAAGCAGGAGGTGCAGAGGGCTTTCCCTTTGCCCATGTCCTTTGGGCAGGATGTGGATGCAGCTGTCGGGGCAGCTCTGGTCATGCTCCGGAGACACCTCAACCAGAAGGAATCTTAG
Amino sequence
MAARPITLGIDLGTTSVKAALLRAAPDDPSGFAVLASCARAARAEAAVESAVAGPQGREQDVSRILQALHECLAALPRPQLRSVVGIGVSGQMHGVVFWKTGQGCEWTEGGITPVFEPRAVSHLVTWQDGRCSSEFLASLPQPKSHLSVATGFGCATIFWLLKYRPEFLKSYDAAGTIHDYVVAMLCGLPRPLMSDQNAASWGYFNTQSQSWNVETLRSSGFPVHLLPDIAEPGSVAGRTSHMWFEIPKGTQVGVALGDLQASVYSCMAQRTDAVLNISTSVQLAASMPSGFQPAQTPDPTAPVAYFPYFNRTYLGVAASLNGGNVLATFVHMLVQWMADLGLEVEESTVYSRMIQAAVQQRDTHLTITPTVLGERHLPDQLASVTRISSSDLSLGHVTRALCRGIVQNLHSMLPIQQLQDWGVERVMGSGSALSRNDVLKQEVQRAFPLPMSFGQDVDAAVGAALVMLRRHLNQKES*