ENST00000342784.7 SYDE1
Information
- Transcript ID
- ENST00000342784.7
- Genome
- hg19
- Position
- chr19:15,218,212-15,225,785
- Strand
- +
- CDS length
- 2,208
- Amino acid length
- 736
- Gene symbol
- SYDE1
- Gene type
- protein-coding
- Gene description
- synapse defective Rho GTPase homolog 1
- Gene Entrez Gene ID
- 85360
Variants
Display target variant
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Variant name | Gene | AA change | CDS | Japanese frequency |
TogoVar | MGeND | Genome | ClinVar | CIViC evidence | DisGeNET entry | COSMIC occurrence |
Prediction | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | Entry | Origin | Annotation | |||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Size | Chromosome | Start | Stop | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | ||||||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Gene symbol | Chromosome | Genomic start | Genomic stop | Strand | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | |||||||||||||||
Exon
| Exon number | Start | Stop |
|---|---|---|
| 1 | 15,218,212 | 15,218,332 |
| 2 | 15,219,867 | 15,220,208 |
| 3 | 15,220,515 | 15,221,159 |
| 4 | 15,221,332 | 15,221,546 |
| 5 | 15,222,124 | 15,222,250 |
| 6 | 15,222,443 | 15,222,603 |
| 7 | 15,223,157 | 15,223,382 |
| 8 | 15,224,371 | 15,225,785 |
CDS
| Exon number | Type | Start | Stop |
|---|---|---|---|
| 1 | CDS | 15,218,245 | 15,218,332 |
| 2 | CDS | 15,219,867 | 15,220,208 |
| 3 | CDS | 15,220,515 | 15,221,159 |
| 4 | CDS | 15,221,332 | 15,221,546 |
| 5 | CDS | 15,222,124 | 15,222,250 |
| 6 | CDS | 15,222,443 | 15,222,603 |
| 7 | CDS | 15,223,157 | 15,223,382 |
| 8 | CDS | 15,224,371 | 15,224,774 |
Other genome
| Genome | Chromosome | Start | End | Links |
|---|---|---|---|---|
| hg38 | chr19 | 15,107,401 | 15,114,974 | Link |
CDS sequence
ATGGCCGAGCCGCTACTCAGGAAAACCTTCTCCCGCCTGCGGGGCCGGGAGAAACTTCCCCGGAAAAAGTCGGACGCCAAGGAGCGCGGCCACCCAGCCCAGCGCCCAGAGCCCAGCCCTCCAGAGCCAGAGCCCCAGGCTCCCGAAGGGTCCCAGGCCGGAGCAGAGGGGCCCTCCAGCCCCGAGGCATCAAGGAGCCCTGCACGGGGAGCCTACCTGCAAAGCCTGGAGCCCAGTAGCCGCCGATGGGTGCTGGGTGGGGCCAAGCCAGCTGAGGACACCTCTTTAGGGCCTGGGGTACCTGGCACTGGGGAGCCCGCCGGCGAGATCTGGTACAACCCCATCCCTGAGGAAGACCCCAGACCTCCAGCACCTGAGCCCCCGGGGCCACAGCCTGGCTCAGCTGAGTCAGAGGGCCTGGCCCCCCAAGGTGCAGCCCCCGCCAGCCCCCCAACCAAAGCCTCCCGCACCAAGTCCCCGGGCCCCGCCAGGCGCCTCTCCATAAAGATGAAGAAGCTGCCGGAACTGCGGCGCCGCCTGAGCCTGCGAGGCCCCCGGGCTGGCAGGGAGCGCGAGAGGGCTGCCCCTGCGGGCTCCGTCATCAGCCGCTACCACCTGGACAGCAGCGTGGGGGGCCCCGGGCCGGCAGCAGGGCCTGGGGGCACCCGGAGCCCGAGGGCCGGTTACCTCAGCGACGGGGACTCACCGGAGCGCCCAGCTGGGCCCCCATCACCCACCTCCTTCCGGCCCTACGAGGTGGGTCCCGCAGCCCGGGCACCCCCGGCCGCACTCTGGGGCCGCCTCAGCCTGCACCTGTACGGTCTCGGGGGGCTGCGGCCAGCGCCGGGGGCCACCCCCAGGGACCTCTGCTGCCTACTGCAAGTGGATGGGGAGGCCAGGGCCCGAACAGGGCCACTGCGAGGGGGGCCGGACTTCCTGCGGCTGGACCACACCTTCCACCTGGAGCTGGAGGCCGCCAGGCTCCTGCGCGCCCTGGTGCTTGCGTGGGACCCTGGCGTGAGAAGGCACCGGCCCTGTGCCCAGGGCACCGTGCTGCTGCCCACGGTCTTCCGAGGGTGCCAGGCCCAACAGCTGGCCGTGCGCCTGGAGCCTCAGGGGCTGCTGTATGCCAAGCTGACCCTGTCGGAGCAGCAGGAAGCCCCTGCCACAGCTGAGCCCCGCGTCTTTGGGCTGCCCCTGCCACTGCTGGTGGAGCGGGAGCGGCCCCCCGGCCAGGTGCCCCTCATCATCCAGAAGTGCGTTGGGCAGATCGAGCGCCGAGGGCTGCGGGTAGTGGGACTGTACCGTCTTTGTGGCTCAGCGGCAGTGAAGAAAGAGCTTCGGGATGCCTTTGAGCGGGACAGTGCAGCGGTCTGCCTATCTGAGGACCTGTACCCCGATATCAATGTCATCACTGGCATCCTCAAGGATTATCTTCGAGAGTTGCCCACCCCACTCATCACCCAGCCCCTGTATAAGGTGGTACTGGAGGCCATGGCCCGGGACCCCCCAAACAGAGTTCCCCCCACCACTGAGGGCACCCGAGGGCTCCTCAGCTGCCTGCCAGATGTGGAAAGGGCCACGCTGACGCTTCTCCTGGACCACCTGCGCCTCGTCTCCTCCTTCCATGCCTACAACCGCATGACCCCACAGAACTTGGCCGTGTGCTTCGGGCCTGTGCTGCTGCCGGCACGCCAGGCGCCCACAAGGCCTCGTGCCCGCAGCTCCGGCCCAGGCCTTGCCAGTGCAGTGGACTTCAAGCACCACATCGAGGTGCTGCACTACCTGCTGCAGTCTTGGCCAGATCCCCGCCTGCCCCGACAATCTCCAGATGTCGCGCCTTACTTGCGACCCAAACGACAGCCACCTCTGCACCTGCCGCTGGCAGACCCCGAAGTGGTGACTCGGCCCCGCGGTCGAGGAGGCCCCGAAAGCCCCCCGAGCAACCGCTACGCCGGCGACTGGAGCGTTTGCGGGCGGGACTTCCTGCCCTGTGGGCGGGATTTCCTGTCCGGGCCAGACTACGACCACGTGACGGGCAGTGACAGCGAGGACGAGGACGAGGAGGTCGGCGAGCCGAGGGTCACCGGTGACTTCGAAGACGACTTCGATGCGCCCTTCAACCCGCACCTGAATCTCAAAGACTTCGACGCCCTCATCCTGGATCTGGAGAGAGAGCTCTCCAAGCAAATCAACGTGTGCCTCTGA
Amino sequence
MAEPLLRKTFSRLRGREKLPRKKSDAKERGHPAQRPEPSPPEPEPQAPEGSQAGAEGPSSPEASRSPARGAYLQSLEPSSRRWVLGGAKPAEDTSLGPGVPGTGEPAGEIWYNPIPEEDPRPPAPEPPGPQPGSAESEGLAPQGAAPASPPTKASRTKSPGPARRLSIKMKKLPELRRRLSLRGPRAGRERERAAPAGSVISRYHLDSSVGGPGPAAGPGGTRSPRAGYLSDGDSPERPAGPPSPTSFRPYEVGPAARAPPAALWGRLSLHLYGLGGLRPAPGATPRDLCCLLQVDGEARARTGPLRGGPDFLRLDHTFHLELEAARLLRALVLAWDPGVRRHRPCAQGTVLLPTVFRGCQAQQLAVRLEPQGLLYAKLTLSEQQEAPATAEPRVFGLPLPLLVERERPPGQVPLIIQKCVGQIERRGLRVVGLYRLCGSAAVKKELRDAFERDSAAVCLSEDLYPDINVITGILKDYLRELPTPLITQPLYKVVLEAMARDPPNRVPPTTEGTRGLLSCLPDVERATLTLLLDHLRLVSSFHAYNRMTPQNLAVCFGPVLLPARQAPTRPRARSSGPGLASAVDFKHHIEVLHYLLQSWPDPRLPRQSPDVAPYLRPKRQPPLHLPLADPEVVTRPRGRGGPESPPSNRYAGDWSVCGRDFLPCGRDFLSGPDYDHVTGSDSEDEDEEVGEPRVTGDFEDDFDAPFNPHLNLKDFDALILDLERELSKQINVCL*