ENST00000429762.7 VSX1

Information
Transcript ID
ENST00000429762.7
Genome
hg19
Position
chr20:25,051,521-25,062,767
Strand
-
CDS length
906
Amino acid length
302
Gene symbol
VSX1
Gene type
protein-coding
Gene description
visual system homeobox 1
Gene Entrez Gene ID
30813
Variants

Display target variant


Search Word
Target data :
MGeND data only
Category :
Search word :
Filtering :
Variant name Gene AA change CDS Japanese
frequency		 TogoVar MGeND Genome ClinVar CIViC evidence DisGeNET entry COSMIC
occurrence		 Prediction
Entry Origin Type Annotation Entry Origin Annotation
Search Word
Target data :
MGeND data only
Category :
Search word :
Filtering :
Name MGeND Type Genome Size Chromosome Start Stop Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Search Word
Target data :
MGeND data only
Category :
Search word :
Filtering :
Name MGeND Type Genome Gene symbol Chromosome Genomic start Genomic stop Strand Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Exon
Exon number Start Stop
5 25,051,521 25,052,654
4 25,058,321 25,058,501
3 25,059,465 25,059,588
2 25,060,072 25,060,150
1 25,062,309 25,062,767
CDS
Exon number Type Start Stop
5 CDS 25,052,557 25,052,654
4 CDS 25,058,321 25,058,501
3 CDS 25,059,465 25,059,588
2 CDS 25,060,072 25,060,150
1 CDS 25,062,309 25,062,732
Other genome
Genome Chromosome Start End Links
hg38 chr20 25,070,885 25,082,131 Link
CDS sequence
ATGACCGGCCGGGACTCGCTTTCCGACGGGCGCACTAGCAGCAGGGCGCTGGTGCCTGGCGGTTCCCCTAGGGGCTCGCGCCCCCGGGGCTTCGCCATCACGGACCTGCTGGGCTTGGAGGCCGAGCTGCCGGCGCCCGCTGGCCCAGGACAGGGATCTGGCTGCGAGGGTCCGGCAGTCGCGCCGTGCCCGGGCCCGGGGCTTGACGGCTCCAGCCTGGCGCGTGGGGCCCTACCGCTGGGACTCGGCCTCCTCTGTGGCTTCGGCACGCAGCCGCCGGCGGCCGCTCGAGCACCCTGCCTGCTCCTAGCGGACGTGCCGTTCCTGCCGCCCAGGGGCCCCGAGCCCGCTGCCCCGCTGGCTCCCAGCCGTCCGCCGCCTGCGCTCGGCCGCCAGAAGCGCAGCGACAGCGTCTCCACGTCCGATGAGGACAGCCAGTCTGAAGACAGGAATGACCTAAAGGCATCCCCCACCTTGGGCAAGAGGAAGAAGCGGCGGCACAGGACAGTTTTCACTGCTCACCAGCTGGAAGAGTTGGAGAAGGCATTCAGCGAGGCCCACTACCCTGATGTGTATGCCCGAGAAATGCTGGCTGTGAAAACTGAGCTCCCCGAAGACCGGATACAGGTCTGGTTTCAAAACCGCAGGGCCAAATGGCGCAAGCGGGAGAAGCGCTGGGGCGGCAGCAGCGTGATGGCCGAGTACGGGCTGTACGGGGCCATGGTGCGCCACTGCATCCCGCTGCCAGACTCCGTGCTCAACTCCGCCGAGGGCGGCCTGCTGGGCTCCTGCGCGCCCTGGCTCCTGGTGCAAACTTCTGCTCCTGGAGGCTCCCGTTCACTGGACTTTGCAGGAGACACACAGGCTCCCCAGACCCCGTGGTGGTGCCTGATGACCTTCAGCTGA
Amino sequence
MTGRDSLSDGRTSSRALVPGGSPRGSRPRGFAITDLLGLEAELPAPAGPGQGSGCEGPAVAPCPGPGLDGSSLARGALPLGLGLLCGFGTQPPAAARAPCLLLADVPFLPPRGPEPAAPLAPSRPPPALGRQKRSDSVSTSDEDSQSEDRNDLKASPTLGKRKKRRHRTVFTAHQLEELEKAFSEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRKREKRWGGSSVMAEYGLYGAMVRHCIPLPDSVLNSAEGGLLGSCAPWLLVQTSAPGGSRSLDFAGDTQAPQTPWWCLMTFS*