ENST00000444511.6 VSX1

Information
Transcript ID
ENST00000444511.6
Genome
hg19
Position
chr20:25,052,120-25,062,767
Strand
-
CDS length
711
Amino acid length
237
Gene symbol
VSX1
Gene type
protein-coding
Gene description
visual system homeobox 1
Gene Entrez Gene ID
30813
Variants

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Target data :
MGeND data only
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Variant name Gene AA change CDS Japanese
frequency		 TogoVar MGeND Genome ClinVar CIViC evidence DisGeNET entry COSMIC
occurrence		 Prediction
Entry Origin Type Annotation Entry Origin Annotation
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Target data :
MGeND data only
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Name MGeND Type Genome Size Chromosome Start Stop Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
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Target data :
MGeND data only
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Name MGeND Type Genome Gene symbol Chromosome Genomic start Genomic stop Strand Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Exon
Exon number Start Stop
4 25,052,120 25,052,654
3 25,059,465 25,059,588
2 25,060,072 25,060,150
1 25,062,309 25,062,767
CDS
Exon number Type Start Stop
4 CDS 25,052,571 25,052,654
3 CDS 25,059,465 25,059,588
2 CDS 25,060,072 25,060,150
1 CDS 25,062,309 25,062,732
Other genome
Genome Chromosome Start End Links
hg38 chr20 25,071,484 25,082,131 Link
CDS sequence
ATGACCGGCCGGGACTCGCTTTCCGACGGGCGCACTAGCAGCAGGGCGCTGGTGCCTGGCGGTTCCCCTAGGGGCTCGCGCCCCCGGGGCTTCGCCATCACGGACCTGCTGGGCTTGGAGGCCGAGCTGCCGGCGCCCGCTGGCCCAGGACAGGGATCTGGCTGCGAGGGTCCGGCAGTCGCGCCGTGCCCGGGCCCGGGGCTTGACGGCTCCAGCCTGGCGCGTGGGGCCCTACCGCTGGGACTCGGCCTCCTCTGTGGCTTCGGCACGCAGCCGCCGGCGGCCGCTCGAGCACCCTGCCTGCTCCTAGCGGACGTGCCGTTCCTGCCGCCCAGGGGCCCCGAGCCCGCTGCCCCGCTGGCTCCCAGCCGTCCGCCGCCTGCGCTCGGCCGCCAGAAGCGCAGCGACAGCGTCTCCACGTCCGATGAGGACAGCCAGTCTGAAGACAGGAATGACCTAAAGGCATCCCCCACCTTGGGCAAGAGGAAGAAGCGGCGGCACAGGACAGTTTTCACTGCTCACCAGCTGGAAGAGTTGGAGAAGGCATTCAGCGAGGCCCACTACCCTGATGTGTATGCCCGAGAAATGCTGGCTGTGAAAACTGAGCTCCCCGAAGACCGGATACAGTGCAAACTTCTGCTCCTGGAGGCTCCCGTTCACTGGACTTTGCAGGAGACACACAGGCTCCCCAGACCCCGTGGTGGTGCCTGA
Amino sequence
MTGRDSLSDGRTSSRALVPGGSPRGSRPRGFAITDLLGLEAELPAPAGPGQGSGCEGPAVAPCPGPGLDGSSLARGALPLGLGLLCGFGTQPPAAARAPCLLLADVPFLPPRGPEPAAPLAPSRPPPALGRQKRSDSVSTSDEDSQSEDRNDLKASPTLGKRKKRRHRTVFTAHQLEELEKAFSEAHYPDVYAREMLAVKTELPEDRIQCKLLLLEAPVHWTLQETHRLPRPRGGA*