ENST00000389797.8 LRCH1

Information
Transcript ID
ENST00000389797.8
Genome
hg38
Position
chr13:46,553,170-46,744,898
Strand
+
CDS length
2,292
Amino acid length
764
Gene symbol
LRCH1
Gene type
protein-coding
Gene description
leucine rich repeats and calponin homology domain containing 1
Gene Entrez Gene ID
23143
Variants

Display target variant


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Target data :
MGeND data only
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Variant name Gene AA change CDS Japanese
frequency		 TogoVar MGeND Genome ClinVar CIViC evidence DisGeNET entry COSMIC
occurrence		 Prediction
Entry Origin Type Annotation Entry Origin Annotation
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Target data :
MGeND data only
Category :
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Name MGeND Type Genome Size Chromosome Start Stop Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Search Word
Target data :
MGeND data only
Category :
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Name MGeND Type Genome Gene symbol Chromosome Genomic start Genomic stop Strand Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Exon
Exon number Start Stop
1 46,553,170 46,553,703
2 46,650,201 46,650,345
3 46,669,030 46,669,156
4 46,681,741 46,681,846
5 46,685,905 46,686,041
6 46,687,852 46,687,979
7 46,689,133 46,689,196
8 46,692,536 46,692,641
9 46,694,893 46,695,017
10 46,699,336 46,699,403
11 46,701,121 46,701,207
12 46,705,068 46,705,157
13 46,705,268 46,705,304
14 46,711,791 46,711,844
15 46,712,525 46,712,597
16 46,715,560 46,715,664
17 46,723,221 46,723,330
18 46,728,847 46,728,984
19 46,733,921 46,733,998
20 46,741,642 46,744,898
CDS
Exon number Type Start Stop
1 CDS 46,553,397 46,553,703
2 CDS 46,650,201 46,650,345
3 CDS 46,669,030 46,669,156
4 CDS 46,681,741 46,681,846
5 CDS 46,685,905 46,686,041
6 CDS 46,687,852 46,687,979
7 CDS 46,689,133 46,689,196
8 CDS 46,692,536 46,692,641
9 CDS 46,694,893 46,695,017
10 CDS 46,699,336 46,699,403
11 CDS 46,701,121 46,701,207
12 CDS 46,705,068 46,705,157
13 CDS 46,705,268 46,705,304
14 CDS 46,711,791 46,711,844
15 CDS 46,712,525 46,712,597
16 CDS 46,715,560 46,715,664
17 CDS 46,723,221 46,723,330
18 CDS 46,728,847 46,728,984
19 CDS 46,733,921 46,733,998
20 CDS 46,741,642 46,741,848
Other genome
Genome Chromosome Start End Links
hg19 chr13 47,127,305 47,319,033 Link
CDS sequence
ATGGCGACGCCGGGAAGCGAACCCCAACCTTTCGTCCCGGCCCTTTCGGTAGCTACTCTGCACCCACTTCATCATCCCCACCACCACCACCACCACCATCAGCACCACGGAGGAACCGGCGCCCCCGGCGGGGCGGGTGGTGGCGGCGGTGGCAGCGGGGGCTTCAACCTGCCCTTGAACCGGGGTCTGGAGCGCGCGCTTGAGGAGGCGGCCAACTCCGGGGGGCTGAACCTGAGCGCCAGGAAATTGAAGGAATTTCCCCGTACCGCAGCCCCCGGGCACGACCTCTCGGACACGGTGCAGGCAGACTTATCTAAAAACAGACTGGTTGAAGTTCCAATGGAATTGTGCCATTTTGTATCACTGGAAATTCTTAATCTGTATCACAACTGTATCAGAGTCATTCCTGAGGCCATCGTTAATCTGCAGATGCTGACTTACCTGAACTTGAGTCGAAATCAGCTGTCCGCCCTGCCTGCCTGCCTGTGTGGTCTGCCTCTCAAAGTCTTAATCGCAAGTAACAACAAACTTGGATCATTACCAGAAGAGATAGGTCAGCTCAAACAGTTAATGGAGCTGGATGTCAGCTGCAACGAGATCACAGCGTTGCCCCAGCAGATAGGTCAGTTGAAATCTCTACGAGAACTGAATGTCAGAAGAAATTACCTTAAAGTTTTACCACAAGAACTAGTAGATCTTTCCTTGGTAAAGTTTGACTTTTCCTGCAACAAAGTGCTCGTGATTCCAATTTGTTTTAGAGAGATGAAGCAGCTGCAAGTGTTACTACTTGAGAATAACCCTCTGCAGTCTCCTCCAGCACAGATTTGCACAAAGGGCAAAGTTCACATATTTAAGTATCTGAGCATACAAGCATGCCAGATTAAGACAGCTGACTCCCTTTATCTCCACACCATGGAGAGGCCACATTTACACCAGCACGTGGAAGATGGCAAGAAGGATTCTGATTCGGGAGTTGGAAGTGATAATGGAGATAAGCGATTATCTGCCACCGAGCCTTCTGACGAAGACACTGTTAGCCTCAATGTGCCAATGTCAAACATCATGGAAGAAGAACAGATCATCAAGGAGGACTCGTGCCATCGCCTTAGCCCCGTTAAAGGGGAATTTCATCAGGAATTTCAACCGGAGCCTTCCCTTTTGGGTGACAGCACCAACTCAGGAGAAGAAAGAGACCAGTTTACTGATAGAGCAGATGGTCTCCATTCGGAATTTATGAACTATAAGGCAAGGGCAGAAGACTGTGAAGAGCTGTTACGGATAGAAGAGGATGTGCACTGGCAAACTGAGGGCATAATAAGTTCATCCAAAGATCAGGACATGGATATAGCAATGATCGAGCAGCTGAGAGAAGCAGTAGATTTGCTGCAAGATCCCAATGGATTAAGCACAGATATTACAGAGAGAAGTGTTTTAAACCTATATCCTATGGGATCAGCAGAAGCCTTAGAATTACAAGATTCTGCACTGAATGGTCAAATACAGCTGGAGACATCTCCGGTGTGTGAGGTGCAAAGTGATCTAACATTACAGAGTAACGGGAGCCAGTATTCTCCAAATGAGATTAGAGAGAACTCCCCTGCAGTCTCTCCTACCACAAACAGCACAGCTCCATTTGGCCTGAAGCCTCGATCAGACCCAGCCCTCATTCTTCCTCCTATCTCCTTCAACACACTTACACAGGCACAGACATGGGACAGCTCTAGCTACAGTGTTCCATCTGAAGGAGACAGTGACAATGTGTTTCTAAGACCTCAGAGAAATTTGGAATCTATAGACCCGCAGTTTACAATCCGGAGGAAAATGGAGCAGATGAGAGAAGAGAAAGAGCTGGTGGAACAACTTCGTGAGAGCATTGAGATGAGATTGAAGGTCAGTCTACACGAAGACCTGGGGGCAGCCCTCATGGATGGTGTCGTCCTCTGCCATCTGGTCAACCACATCCGCCCACGGTCGGTTGCAAGCATCCATGTCCCATCACCAGCGGTTCCCAAACTTAGCATGGCCAAATGCAGAAGAAATGTGGAAAACTTTTTGGAAGCATGCCGAAAATTAGGAGTACCAGAGGCTGACCTCTGCTCTCCGTGTGACATCCTGCAGTTGGATTTTCGTCACATTCGAAAGACTGTTGACACTCTGCTGGCACTCGGGGAGAAAGCCCCACCACCAACTTCTGCCCTCCGCTCCAGGGACCTTATAGGCTTCTGTCTTGTCCATATTCTCTTTATAGTGCTGGTCTATATCACTTACCACTGGAATGCTCTGTCCGCATAA
Amino sequence
MATPGSEPQPFVPALSVATLHPLHHPHHHHHHHQHHGGTGAPGGAGGGGGGSGGFNLPLNRGLERALEEAANSGGLNLSARKLKEFPRTAAPGHDLSDTVQADLSKNRLVEVPMELCHFVSLEILNLYHNCIRVIPEAIVNLQMLTYLNLSRNQLSALPACLCGLPLKVLIASNNKLGSLPEEIGQLKQLMELDVSCNEITALPQQIGQLKSLRELNVRRNYLKVLPQELVDLSLVKFDFSCNKVLVIPICFREMKQLQVLLLENNPLQSPPAQICTKGKVHIFKYLSIQACQIKTADSLYLHTMERPHLHQHVEDGKKDSDSGVGSDNGDKRLSATEPSDEDTVSLNVPMSNIMEEEQIIKEDSCHRLSPVKGEFHQEFQPEPSLLGDSTNSGEERDQFTDRADGLHSEFMNYKARAEDCEELLRIEEDVHWQTEGIISSSKDQDMDIAMIEQLREAVDLLQDPNGLSTDITERSVLNLYPMGSAEALELQDSALNGQIQLETSPVCEVQSDLTLQSNGSQYSPNEIRENSPAVSPTTNSTAPFGLKPRSDPALILPPISFNTLTQAQTWDSSSYSVPSEGDSDNVFLRPQRNLESIDPQFTIRRKMEQMREEKELVEQLRESIEMRLKVSLHEDLGAALMDGVVLCHLVNHIRPRSVASIHVPSPAVPKLSMAKCRRNVENFLEACRKLGVPEADLCSPCDILQLDFRHIRKTVDTLLALGEKAPPPTSALRSRDLIGFCLVHILFIVLVYITYHWNALSA*