ENST00000336216.9 HMG20A
Information
- Transcript ID
- ENST00000336216.9
- Genome
- hg38
- Position
- chr15:77,420,888-77,485,603
- Strand
- +
- CDS length
- 1,044
- Amino acid length
- 348
- Gene symbol
- HMG20A
- Gene type
- protein-coding
- Gene description
- high mobility group 20A
- Gene Entrez Gene ID
- 10363
Variants
Display target variant
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Variant name | Gene | AA change | CDS | Japanese frequency |
TogoVar | MGeND | Genome | ClinVar | CIViC evidence | DisGeNET entry | COSMIC occurrence |
Prediction | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | Entry | Origin | Annotation | |||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Size | Chromosome | Start | Stop | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | ||||||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Gene symbol | Chromosome | Genomic start | Genomic stop | Strand | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | |||||||||||||||
Exon
| Exon number | Start | Stop |
|---|---|---|
| 1 | 77,420,888 | 77,421,004 |
| 2 | 77,458,404 | 77,458,496 |
| 3 | 77,464,240 | 77,464,387 |
| 4 | 77,467,095 | 77,467,307 |
| 5 | 77,470,910 | 77,471,042 |
| 6 | 77,471,783 | 77,471,814 |
| 7 | 77,477,555 | 77,477,630 |
| 8 | 77,478,295 | 77,478,510 |
| 9 | 77,479,179 | 77,479,321 |
| 10 | 77,482,970 | 77,485,603 |
CDS
| Exon number | Type | Start | Stop |
|---|---|---|---|
| 2 | CDS | 77,458,408 | 77,458,496 |
| 3 | CDS | 77,464,240 | 77,464,387 |
| 4 | CDS | 77,467,095 | 77,467,307 |
| 5 | CDS | 77,470,910 | 77,471,042 |
| 6 | CDS | 77,471,783 | 77,471,814 |
| 7 | CDS | 77,477,555 | 77,477,630 |
| 8 | CDS | 77,478,295 | 77,478,510 |
| 9 | CDS | 77,479,179 | 77,479,315 |
Other genome
| Genome | Chromosome | Start | End | Links |
|---|---|---|---|---|
| hg19 | chr15 | 77,713,230 | 77,777,945 | Link |
CDS sequence
ATGGAAAACTTGATGACTAGCTCCACCCTACCGCCCCTTTTTGCAGATGAAGACGGTTCCAAGGAGAGTAATGATCTGGCTACCACTGGGTTAAATCACCCAGAGGTTCCATACAGTAGTGGCGCCACATCATCCACCAACAATCCAGAATTTGTGGAGGATCTCTCTCAAGGTCAGTTGCTTCAGAGTGAGTCTTCAAATGCAGCAGAAGGCAATGAACAGAGGCATGAAGATGAGCAACGAAGTAAACGAGGAGGTTGGTCCAAAGGAAGAAAGAGGAAGAAACCTCTTCGAGACAGCAATGCACCCAAATCCCCCCTTACAGGATATGTTCGGTTCATGAATGAGCGTCGAGAACAACTTCGAGCAAAGAGACCAGAAGTCCCATTTCCAGAAATCACAAGGATGTTAGGCAATGAATGGAGTAAACTGCCTCCTGAGGAAAAACAGCGCTACCTTGATGAAGCAGACAGAGATAAGGAGCGTTACATGAAGGAACTGGAACAGTATCAGAAAACAGAGGCCTACAAGGTCTTCAGTAGGAAAACCCAGGACCGTCAGAAAGGCAAATCTCATAGGCAAGATGCAGCCCGGCAGGCCACTCATGATCATGAGAAAGAAACAGAGGTAAAGGAACGGTCTGTTTTTGACATCCCTATATTTACAGAGGAATTCTTGAACCATAGCAAAGCTCGGGAAGCAGAGCTCCGCCAGCTTCGCAAATCCAACATGGAGTTTGAGGAGAGGAATGCAGCCCTGCAAAAGCACGTGGAGAGCATGCGCACAGCAGTGGAGAAGCTGGAGGTGGATGTGATCCAGGAGCGGAGCCGCAACACAGTCTTACAGCAGCACCTGGAGACCCTGCGGCAGGTGCTGACCAGCAGCTTTGCCAGCATGCCCTTGCCTGGAAGTGGAGAGACACCTACAGTGGACACCATTGACTCATATATGAACAGACTGCACAGTATTATTTTAGCTAATCCCCAAGACAATGAAAACTTCATAGCTACAGTTCGAGAAGTTGTGAACAGACTCGATCGTTAG
Amino sequence
MENLMTSSTLPPLFADEDGSKESNDLATTGLNHPEVPYSSGATSSTNNPEFVEDLSQGQLLQSESSNAAEGNEQRHEDEQRSKRGGWSKGRKRKKPLRDSNAPKSPLTGYVRFMNERREQLRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKELEQYQKTEAYKVFSRKTQDRQKGKSHRQDAARQATHDHEKETEVKERSVFDIPIFTEEFLNHSKAREAELRQLRKSNMEFEERNAALQKHVESMRTAVEKLEVDVIQERSRNTVLQQHLETLRQVLTSSFASMPLPGSGETPTVDTIDSYMNRLHSIILANPQDNENFIATVREVVNRLDR*