ENST00000261897.5 PRPF40B

Information
Transcript ID
ENST00000261897.5
Genome
hg38
Position
chr12:49,623,620-49,644,666
Strand
+
CDS length
2,577
Amino acid length
859
Gene symbol
PRPF40B
Gene type
protein-coding
Gene description
pre-mRNA processing factor 40 homolog B
Gene Entrez Gene ID
25766
Variants

Display target variant


Search Word
Target data :
MGeND data only
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Variant name Gene AA change CDS Japanese
frequency		 TogoVar MGeND Genome ClinVar CIViC evidence DisGeNET entry COSMIC
occurrence		 Prediction
Entry Origin Type Annotation Entry Origin Annotation
Search Word
Target data :
MGeND data only
Category :
Search word :
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Name MGeND Type Genome Size Chromosome Start Stop Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Search Word
Target data :
MGeND data only
Category :
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Filtering :
Name MGeND Type Genome Gene symbol Chromosome Genomic start Genomic stop Strand Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Exon
Exon number Start Stop
1 49,623,620 49,624,170
2 49,631,401 49,631,544
3 49,631,860 49,631,925
4 49,632,596 49,632,623
5 49,632,855 49,632,880
6 49,633,014 49,633,124
7 49,633,427 49,633,547
8 49,633,637 49,633,661
9 49,633,886 49,634,092
10 49,634,332 49,634,455
11 49,634,538 49,634,602
12 49,635,099 49,635,263
13 49,635,365 49,635,473
14 49,635,843 49,635,993
15 49,636,716 49,636,849
16 49,637,470 49,637,584
17 49,637,733 49,637,824
18 49,641,929 49,642,024
19 49,642,235 49,642,372
20 49,642,580 49,642,675
21 49,642,927 49,643,016
22 49,643,223 49,643,397
23 49,643,691 49,643,752
24 49,643,861 49,644,004
25 49,644,100 49,644,666
CDS
Exon number Type Start Stop
2 CDS 49,631,401 49,631,544
3 CDS 49,631,860 49,631,925
4 CDS 49,632,596 49,632,623
5 CDS 49,632,855 49,632,880
6 CDS 49,633,014 49,633,124
7 CDS 49,633,427 49,633,547
8 CDS 49,633,637 49,633,661
9 CDS 49,633,886 49,634,092
10 CDS 49,634,332 49,634,455
11 CDS 49,634,538 49,634,602
12 CDS 49,635,099 49,635,263
13 CDS 49,635,365 49,635,473
14 CDS 49,635,843 49,635,993
15 CDS 49,636,716 49,636,849
16 CDS 49,637,470 49,637,584
17 CDS 49,637,733 49,637,824
18 CDS 49,641,929 49,642,024
19 CDS 49,642,235 49,642,372
20 CDS 49,642,580 49,642,675
21 CDS 49,642,927 49,643,016
22 CDS 49,643,223 49,643,397
23 CDS 49,643,691 49,643,752
24 CDS 49,643,861 49,644,004
25 CDS 49,644,100 49,644,192
Other genome
Genome Chromosome Start End Links
hg19 chr12 50,017,403 50,038,449 Link
CDS sequence
ATGCCCCCTCCAGGGATCCCCCCACCCTTTCCTCCGATGGGGCTACCCCCCATGAGTCAGAGACCACCAGCTATCCCCCCCATGCCACCTGGCATCCTGCCCCCAATGCTTCCACCAATGGGGGCGCCACCACCACTCACACAGATACCAGGAATGGTACCTCCGATGATGCCAGGAATGCTGATGCCAGCGGTGCCTGTCACCGCAGCGACGGCTCCGGGTGCGGACACCGCCAGCTCTGCTGTGGCTGGGACAGGCCCTCCGAGGGCCCTATGGAGTGAGCATGTGGCCCCAGATGGGCGCATCTACTACTACAATGCTGACGACAAGCAGTCCGTGTGGGAGAAGCCCAGCGTGCTCAAGTCCAAGGCAGAGCTGCTCCTGTCCCAATGTCCCTGGAAAGAGTACAAGTCGGACACAGGCAAACCTTATTACTATAACAACCAGAGTAAAGAGTCCCGCTGGACCCGGCCCAAGGATCTGGATGACCTAGAGGTTCTAGTCAAACAAGAGGCTGCAGGGAAACAGCAGCAGCAGCTGCCACAGACACTTCAGCCACAGCCACCTCAGCCACAGCCTGACCCCCCACCTGTGCCTCCTGGCCCCACCCCAGTGCCCACAGGCCTCCTGGAACCTGAGCCAGGTGGGAGTGAAGATTGTGATGTGTTGGAGGCCACCCAGCCCCTGGAACAGGGGTTCCTGCAGCAGCTGGAGGAGGGCCCCAGCAGTTCTGGACAGCATCAGCCACAGCAGGAGGAGGAGGAATCAAAGCCAGAACCAGAGAGGTCTGGCCTCAGTTGGAGCAACCGGGAGAAGGCAAAGCAGGCATTCAAGGAACTGCTGAGGGACAAGGCTGTCCCCTCCAATGCCTCATGGGAACAGGCCATGAAGATGGTGGTCACCGACCCCCGTTACAGTGCCTTGCCTAAACTGAGTGAGAAAAAGCAGGCATTCAATGCCTACAAGGCGCAGCGGGAGAAGGAGGAGAAGGAGGAGGCCCGGCTAAGGGCCAAAGAGGCCAAGCAGACCCTGCAGCATTTCCTGGAGCAGCATGAACGCATGACCTCCACCACCCGCTACCGGCGGGCAGAACAGACCTTTGGGGAGCTGGAGGTCTGGGCTGTGGTCCCTGAGAGGGATCGAAAAGAGGTTTATGATGATGTCCTCTTCTTCCTGGCCAAGAAGGAGAAGGAACAGGCCAAGCAGCTCCGGCGCCGCAATATCCAGGCCCTAAAGAGCATCCTGGATGGGATGAGTAGTGTCAACTTCCAAACCACGTGGTCCCAGGCCCAGCAGTACCTCATGGATAACCCCAGCTTTGCTCAGGACCATCAGCTGCAGAACATGGACAAGGAAGATGCACTGATCTGTTTTGAGGAGCACATCCGAGCTTTGGAGAGGGAAGAGGAGGAGGAACGGGAGCGGGCCCGGCTTCGGGAGCGACGCCAACAACGCAAGAATCGGGAGGCCTTCCAGACCTTCCTGGACGAGCTGCATGAGACAGGGCAGCTGCACTCTATGTCCACCTGGATGGAGCTATATCCAGCAGTCAGCACTGATGTCCGCTTTGCCAACATGCTGGGCCAGCCGGGCTCCACCCCTCTGGACTTATTCAAGTTCTATGTGGAGGAGTTGAAGGCACGATTCCATGATGAAAAGAAGATCATTAAGGACATCCTTAAGGTGAACACGGCCTTTGAGGACTTCGCCCACGTCATAAGCTTTGACAAGAGGGCTGCCGCACTGGACGCAGGCAACATCAAGCTGACCTTCAATAGTCTGCTGGAGAAAGCAGAGGCACGGGAGAGGGAGCGGGAGAAGGAGGAGGCACGCAGGATGCGGCGCAGGGAAGCTGCCTTTCGAAGCATGCTGAGGCAGGCTGTGCCTGCTCTGGAGCTAGGCACTGCCTGGGAAGAGGTCCGTGAGCGTTTTGTGTGTGACTCAGCCTTTGAGCAGATCACCCTGGAGTCGGAGCGGATCCGGCTCTTCCGGGAGTTCCTACAGGTGCTGGAGCAGACTGAATGCCAGCACCTCCACACCAAAGGCCGAAAGCATGGCAGGAAAGGCAAGAAGCACCATCACAAGCGTTCCCACTCACCCTCAGGCTCTGAGTCAGAAGAAGAGGAGCTGCCCCCACCATCTCTCCGGCCCCCCAAGCGGAGGAGGCGGAACCCCTCAGAGTCAGGCTCTGAGCCCTCTTCCTCACTTGATTCAGTTGAAAGTGGGGGTGCTGCCCTTGGAGGACGGGGCTCCCCTTCCTCCCATCTTCTTGGAGCAGATCATGGCCTTCGGAAAGCCAAGAAACCAAAAAAGAAAACTAAGAAGAGAAGACACAAGTCGAATAGTCCTGAGAGTGAGACAGACCCTGAGGAGAAAGCTGGCAAGGAGAGCGATGAGAAAGAACAAGAACAGGACAAGGACAGGGAGCTCCAACAGGCAGAGCTCCCTAACCGTTCCCCAGGCTTTGGAATCAAGAAGGAGAAGACAGGCTGGGACACGTCAGAAAGTGAGCTGAGTGAGGGTGAGCTGGAGAGGCGGCGGCGGACACTCCTACAGCAGCTGGATGATCACCAGTGA
Amino sequence
MPPPGIPPPFPPMGLPPMSQRPPAIPPMPPGILPPMLPPMGAPPPLTQIPGMVPPMMPGMLMPAVPVTAATAPGADTASSAVAGTGPPRALWSEHVAPDGRIYYYNADDKQSVWEKPSVLKSKAELLLSQCPWKEYKSDTGKPYYYNNQSKESRWTRPKDLDDLEVLVKQEAAGKQQQQLPQTLQPQPPQPQPDPPPVPPGPTPVPTGLLEPEPGGSEDCDVLEATQPLEQGFLQQLEEGPSSSGQHQPQQEEEESKPEPERSGLSWSNREKAKQAFKELLRDKAVPSNASWEQAMKMVVTDPRYSALPKLSEKKQAFNAYKAQREKEEKEEARLRAKEAKQTLQHFLEQHERMTSTTRYRRAEQTFGELEVWAVVPERDRKEVYDDVLFFLAKKEKEQAKQLRRRNIQALKSILDGMSSVNFQTTWSQAQQYLMDNPSFAQDHQLQNMDKEDALICFEEHIRALEREEEEERERARLRERRQQRKNREAFQTFLDELHETGQLHSMSTWMELYPAVSTDVRFANMLGQPGSTPLDLFKFYVEELKARFHDEKKIIKDILKVNTAFEDFAHVISFDKRAAALDAGNIKLTFNSLLEKAEAREREREKEEARRMRRREAAFRSMLRQAVPALELGTAWEEVRERFVCDSAFEQITLESERIRLFREFLQVLEQTECQHLHTKGRKHGRKGKKHHHKRSHSPSGSESEEEELPPPSLRPPKRRRRNPSESGSEPSSSLDSVESGGAALGGRGSPSSHLLGADHGLRKAKKPKKKTKKRRHKSNSPESETDPEEKAGKESDEKEQEQDKDRELQQAELPNRSPGFGIKKEKTGWDTSESELSEGELERRRRTLLQQLDDHQ*