ENST00000298876.8 SMCO2

Information
Transcript ID
ENST00000298876.8
Genome
hg38
Position
chr12:27,466,810-27,502,185
Strand
+
CDS length
882
Amino acid length
294
Gene symbol
SMCO2
Gene type
protein-coding
Gene description
single-pass membrane protein with coiled-coil domains 2
Gene Entrez Gene ID
341346
Variants

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Target data :
MGeND data only
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Variant name Gene AA change CDS Japanese
frequency		 TogoVar MGeND Genome ClinVar CIViC evidence DisGeNET entry COSMIC
occurrence		 Prediction
Entry Origin Type Annotation Entry Origin Annotation
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Target data :
MGeND data only
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Name MGeND Type Genome Size Chromosome Start Stop Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
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Target data :
MGeND data only
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Name MGeND Type Genome Gene symbol Chromosome Genomic start Genomic stop Strand Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Exon
Exon number Start Stop
1 27,466,810 27,466,975
2 27,470,622 27,470,765
3 27,472,776 27,472,875
4 27,474,786 27,474,913
5 27,488,460 27,488,547
6 27,494,300 27,494,356
7 27,495,680 27,495,855
8 27,501,923 27,502,185
CDS
Exon number Type Start Stop
2 CDS 27,470,632 27,470,765
3 CDS 27,472,776 27,472,875
4 CDS 27,474,786 27,474,913
5 CDS 27,488,460 27,488,547
6 CDS 27,494,300 27,494,356
7 CDS 27,495,680 27,495,855
8 CDS 27,501,923 27,502,121
Other genome
Genome Chromosome Start End Links
hg19 chr12 27,619,743 27,655,118 Link
CDS sequence
ATGGCTCTCACGCCCACAAACCTAAATAACAAAATGTCTCTGCAGATGAAGATGGACTGCCAGGAACAACAGCTGACTAAGAAAAACAATGGCTTTTTCCAAAAGCTCAATGTGACTGAAGGTGCAATGCAGGATTTGCTAAAGGAAATTATCAAAGTGGACCACATCTTAGACAGATCGGATGATGAGGATGACATTTCCTCCGAAAACCCTCAAACTGACTTCCTTCACAAGGGTATGTTGGAGCTAGAGGCTGAGCATGACCAGGACCTGAGTAAACAGGATAAGCAAGAAACAGATGTTGATGAGGACCCTCAAGCGTCTACATCTCTGCAGTTTTCAAAGAAGAACCTCCTTGAACTCTTATTAAAAGACATGCTGACCCTGAAGGGTCAAATTGAAAAGCTGGAGGACCGGGGCCTTGACCTTGATCAAGGGACAAGCACTGAGGTGAATACTTGTAATGAAGTTTATGAATTAAAGAAGAAAGTCATAGAAAGGCTGGAGGACCTTTGCAAGAATGTGGAACTGCTGAGTGCAAAGCTAAGGATGTATCAAATGGAGGCAGAGGACACTGACTCTCACAGTTCTGAGGAAATAGATACGGAAGAGATGGAGGCCCTGCTTCCTCAGGCCCCAGCATCCTTTTTAGTGCAGAAGTCTCCTCCCCGCAATACAGCATGGAAACGTGCACTGAGGATTTTCATCATGTTTGATGTCCTCACCGTCACTGGACTTTTATGTTACATACTATTTTTTGGTGCTACATTTCTCTTTGAAAGGGTGCTTCTGAGAATGCTTGGGTGCCGCACCACATGGGACCTACGGGAGATGAGAGAGCCTTTCTTGAATTTGGAAGTGGAAGCCTTGTTACCCTCCTAA
Amino sequence
MALTPTNLNNKMSLQMKMDCQEQQLTKKNNGFFQKLNVTEGAMQDLLKEIIKVDHILDRSDDEDDISSENPQTDFLHKGMLELEAEHDQDLSKQDKQETDVDEDPQASTSLQFSKKNLLELLLKDMLTLKGQIEKLEDRGLDLDQGTSTEVNTCNEVYELKKKVIERLEDLCKNVELLSAKLRMYQMEAEDTDSHSSEEIDTEEMEALLPQAPASFLVQKSPPRNTAWKRALRIFIMFDVLTVTGLLCYILFFGATFLFERVLLRMLGCRTTWDLREMREPFLNLEVEALLPS*