ENST00000682144.1 PGBD1
Information
- Transcript ID
- ENST00000682144.1
- Genome
- hg38
- Position
- chr6:28,281,572-28,302,549
- Strand
- +
- CDS length
- 2,430
- Amino acid length
- 810
- Gene symbol
- PGBD1
- Gene type
- protein-coding
- Gene description
- piggyBac transposable element derived 1
- Gene Entrez Gene ID
- 84547
Variants
Display target variant
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Variant name | Gene | AA change | CDS | Japanese frequency |
TogoVar | MGeND | Genome | ClinVar | CIViC evidence | DisGeNET entry | COSMIC occurrence |
Prediction | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | Entry | Origin | Annotation | |||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Size | Chromosome | Start | Stop | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | ||||||||||||||
Search Word
| Target data | : |
MGeND data only
|
| Category | : |
|
| Search word | : | |
| Filtering | : |
| Name | MGeND | Type | Genome | Gene symbol | Chromosome | Genomic start | Genomic stop | Strand | Ref | Alt | ClinVar | Origin | Entry | CIViC evidence | DisGeNET entry | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Entry | Origin | Type | Annotation | |||||||||||||||
Exon
| Exon number | Start | Stop |
|---|---|---|
| 1 | 28,281,572 | 28,281,918 |
| 2 | 28,283,776 | 28,284,209 |
| 3 | 28,285,551 | 28,285,707 |
| 4 | 28,287,080 | 28,287,168 |
| 5 | 28,296,816 | 28,296,945 |
| 6 | 28,297,895 | 28,297,991 |
| 7 | 28,300,724 | 28,302,549 |
CDS
| Exon number | Type | Start | Stop |
|---|---|---|---|
| 2 | CDS | 28,283,814 | 28,284,209 |
| 3 | CDS | 28,285,551 | 28,285,707 |
| 4 | CDS | 28,287,080 | 28,287,168 |
| 5 | CDS | 28,296,816 | 28,296,945 |
| 6 | CDS | 28,297,895 | 28,297,991 |
| 7 | CDS | 28,300,724 | 28,302,284 |
Other genome
| Genome | Chromosome | Start | End | Links |
|---|---|---|---|---|
| hg19 | chr6 | 28,249,349 | 28,270,326 | Link |
CDS sequence
ATGTATGAAGCTTTGCCAGGCCCTGCTCCTGAAAATGAAGATGGCCTTGTGAAAGTGAAGGAGGAAGATCCCACCTGGGAGCAGGTGTGCAACTCACAGGAGGGCAGCTCCCACACTCAGGAGATTTGCCGCCTGCGCTTTCGGCACTTCTGCTACCAGGAGGCTCACGGACCCCAGGAAGCTCTGGCCCAACTCCGAGAACTTTGTCATCAATGGCTGAGACCGGAGATGCACACCAAGGAACAGATAATGGAACTGCTGGTGCTGGAGCAGTTCCTGACCATCCTGCCCAAGGAGCTCCAGCCCTGTGTGAAGACATATCCTCTGGAGAGTGGAGAGGAGGCAGTGACAGTGCTGGAGAATCTAGAGACAGGAAGTGGAGACACAGGACAACAGGCCTCTGTCTATATTCAGGGACAGGACATGCACCCAATGGTGGCAGAATATCAAGGAGTCTCTTTGGAGTGTCAGAGCCTCCAGCTCCTGCCTGGGATAACCACCCTGAAGTGTGAACCTCCACAGCGTCCTCAAGGGAACCCCCAAGAAGTGAGTGGGCCTGTTCCCCACGGATCAGCTCATCTCCAGGAAAAAAACCCCAGAGACAAGGCTGTAGTGCCTGTGTTTAACCCAGTCAGGTCCCAGACATTGGTGAAGACTGAGGAAGAAACAGCCCAGGCCGTTGCTGCAGAGAAGTGGTCACATCTGAGTCTGACTCGGAGGAACCTCTGTGGGAACTCAGCTCAGGAGACAGTTATGAGCCTCAGTCCGATGACTGAAGAAATTGTAACTAAAGATAGATTGTTTAAAGCAAAGCAAGAAACTTCTGAAGAAATGGAACAAAGTGGAGAAGCCTCAGGAAAGCCCAACAGAGAGTGTGCACCCCAGATTCCTTGTAGTACTCCTATTGCTACTGAAAGGACAGTTGCACATTTGAACACTCTGAAGGACCGTCACCCAGGTGATTTGTGGGCCCGCATGCACATCTCATCCCTGGAATATGCTGCAGGAGACATTACCCGAAAAGGGAGAAAAAAAGACAAAGCTCGAGTGAGTGAACTGCTCCAAGGCCTCTCATTCTCTGGTGACTCAGATGTGGAAAAAGATAATGAGCCTGAGATCCAGCCTGCTCAAAAGAAGTTAAAGGTATCATGTTTCCCAGAAAAGAGTTGGACCAAAAGAGACATTAAACCCAATTTTCCAAGCTGGTCAGCACTGGATTCTGGACTTTTGAATCTCAAGAGCGAAAAGTTGAACCCAGTAGAGCTTTTTGAATTATTTTTTGATGATGAAACATTCAACTTAATTGTCAATGAAACCAATAATTATGCTTCTCAGAAAAATGTCAGCTTGGAAGTCACAGTTCAGGAAATGAGGTGTGTGTTTGGTGTCTTACTTTTGAGTGGATTTATGAGGCATCCTAGAAGGGAAATGTATTGGGAAGTCTCTGACACCGATCAGAACCTGGTTAGAGATGCAATCAGAAGGGACAGATTTGAATTGATTTTCTCAAACCTGCACTTTGCAGATAATGGCCACCTAGATCAAAAAGATAAGTTTACAAAGTTGAGACCTCTCATAAAACAAATGAATAAAAATTTCCTCTTGTATGCTCCCCTGGAAGAATACTATTGCTTTGATAAGTCAATGTGTGAATGCTTTGATAGTGACCAATTCCTGAATGGAAAGCCTATTAGAATTGGCTATAAAATTTGGTGTGGTACAACCACACAGGGTTATCTGGTTTGGTTTGAACCCTATCAAGAAGAATCAACTATGAAGGTAGATGAGGATCCTGATCTTGGGTTAGGTGGAAATCTAGTGATGAACTTCGCTGATGTTCTTTTAGAGAGAGGTCAGTATCCCTATCACCTGTGTTTTGATAGCTTCTTTACAAGTGTCAAATTGTTGTCAGCCTTGAAAAAGAAGGGGGTGAGGGCAACAGGAACAATTCGTGAGAACAGGACCGAAAAATGTCCCCTTATGAATGTAGAACATATGAAAAAAATGAAGAGAGGGTATTTTGATTTCCGAATAGAAGAAAACAATGAGATAATTTTGTGTCGTTGGTATGGGGATGGCATTATCAGTCTGTGCTCCAATGCTGTGGGCATAGAACCAGTCAATGAGGTAAGCTGTTGTGATGCTGATAACGAAGAAATCCCTCAGATAAGTCAACCATCCATAGTAAAAGTGTATGATGAATGCAAGGAAGGTGTAGCTAAAATGGATCAAATTATTTCGAAATACAGGGTGAGGATAAGAAGCAAGAAATGGTACTCAATTTTGGTGAGCTACATGATTGATGTAGCCATGAACAATGCATGGCAACTACACAGAGCCTGTAACCCAGGTGCTTCTCTAGACCCCTTGGATTTTCGGAGATTTGTTGCACATTTCTACTTGGAACACAATGCTCATCTGTCAGATTAG
Amino sequence
MYEALPGPAPENEDGLVKVKEEDPTWEQVCNSQEGSSHTQEICRLRFRHFCYQEAHGPQEALAQLRELCHQWLRPEMHTKEQIMELLVLEQFLTILPKELQPCVKTYPLESGEEAVTVLENLETGSGDTGQQASVYIQGQDMHPMVAEYQGVSLECQSLQLLPGITTLKCEPPQRPQGNPQEVSGPVPHGSAHLQEKNPRDKAVVPVFNPVRSQTLVKTEEETAQAVAAEKWSHLSLTRRNLCGNSAQETVMSLSPMTEEIVTKDRLFKAKQETSEEMEQSGEASGKPNRECAPQIPCSTPIATERTVAHLNTLKDRHPGDLWARMHISSLEYAAGDITRKGRKKDKARVSELLQGLSFSGDSDVEKDNEPEIQPAQKKLKVSCFPEKSWTKRDIKPNFPSWSALDSGLLNLKSEKLNPVELFELFFDDETFNLIVNETNNYASQKNVSLEVTVQEMRCVFGVLLLSGFMRHPRREMYWEVSDTDQNLVRDAIRRDRFELIFSNLHFADNGHLDQKDKFTKLRPLIKQMNKNFLLYAPLEEYYCFDKSMCECFDSDQFLNGKPIRIGYKIWCGTTTQGYLVWFEPYQEESTMKVDEDPDLGLGGNLVMNFADVLLERGQYPYHLCFDSFFTSVKLLSALKKKGVRATGTIRENRTEKCPLMNVEHMKKMKRGYFDFRIEENNEIILCRWYGDGIISLCSNAVGIEPVNEVSCCDADNEEIPQISQPSIVKVYDECKEGVAKMDQIISKYRVRIRSKKWYSILVSYMIDVAMNNAWQLHRACNPGASLDPLDFRRFVAHFYLEHNAHLSD*