ENST00000619571.5 IFFO1

Information
Transcript ID
ENST00000619571.5
Genome
hg38
Position
chr12:6,539,539-6,556,042
Strand
-
CDS length
1,716
Amino acid length
572
Gene symbol
IFFO1
Gene type
protein-coding
Gene description
intermediate filament family orphan 1
Gene Entrez Gene ID
25900
Variants

Display target variant


Search Word
Target data :
MGeND data only
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Variant name Gene AA change CDS Japanese
frequency		 TogoVar MGeND Genome ClinVar CIViC evidence DisGeNET entry COSMIC
occurrence		 Prediction
Entry Origin Type Annotation Entry Origin Annotation
Search Word
Target data :
MGeND data only
Category :
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Name MGeND Type Genome Size Chromosome Start Stop Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Search Word
Target data :
MGeND data only
Category :
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Name MGeND Type Genome Gene symbol Chromosome Genomic start Genomic stop Strand Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Exon
Exon number Start Stop
10 6,539,539 6,540,588
9 6,541,512 6,541,642
8 6,548,065 6,548,160
7 6,548,425 6,548,545
6 6,548,668 6,548,849
5 6,549,476 6,549,484
4 6,549,756 6,549,896
3 6,550,695 6,550,790
2 6,550,941 6,551,001
1 6,555,257 6,556,042
CDS
Exon number Type Start Stop
10 CDS 6,540,483 6,540,588
9 CDS 6,541,512 6,541,642
8 CDS 6,548,065 6,548,160
7 CDS 6,548,425 6,548,545
6 CDS 6,548,668 6,548,849
5 CDS 6,549,476 6,549,484
4 CDS 6,549,756 6,549,896
3 CDS 6,550,695 6,550,790
2 CDS 6,550,941 6,551,001
1 CDS 6,555,257 6,556,029
Other genome
Genome Chromosome Start End Links
hg19 chr12 6,648,705 6,665,208 Link
CDS sequence
ATGAATCCGTTATTCGGCCCCAACCTCTTCCTCCTGCAGCAGGAGCAGCAGGGCCTGGCCGGGCCACTGGGGGACTCACTGGGAGGCGACCACTTCGCCGGGGGAGGAGACTTGCCCCCGGCGCCTCTCTCGCCGGCCGGCCCTGCTGCCTACTCGCCGCCCGGGCCGGGCCCGGCCCCGCCTGCCGCCATGGCCCTCCGCAATGACCTGGGCTCCAACATCAACGTGCTCAAGACCCTGAACCTCCGGTTCCGCTGCTTCCTGGCCAAGGTGCATGAGCTGGAGCGCCGGAACCGGCTGTTGGAGAAGCAACTGCAGCAAGCGCTGGAGGAGGGTAAGCAGGGCCGGCGGGGCCTGGGTCGTCGCGACCAGGCAGTGCAGACCGGCTTCGTCAGCCCCATCCGGCCCCTGGGGCTGCAGCTGGGCGCCCGGCCGGCCGCTGTCTGCAGCCCTTCGGCGCGCGTGCTGGGCTCGCCCGCGCGCTCCCCGGCCGGCCCCCTCGCGCCCTCCGCGGCCAGCCTCTCGTCGTCCTCCACCTCCACCTCCACCACCTATTCCTCGTCGGCCCGCTTCATGCCCGGCACCATCTGGTCGTTCTCGCACGCCCGCCGGCTCGGGCCGGGACTGGAGCCCACTCTGGTGCAAGGGCCTGGCTTGTCGTGGGTGCACCCGGATGGGGTGGGCGTCCAGATCGACACCATCACGCCCGAGATCCGCGCTCTCTACAACGTGCTGGCCAAAGTGAAGCGGGAGCGGGACGAGTACAAGCGGAGGTGGGAAGAGGAGTACACGGTGCGGATCCAGCTGCAAGACCGTGTAAATGAGCTCCAGGAGGAAGCCCAGGAGGCTGATGCCTGCCAGGAGGAGCTGGCACTGAAGGTGGAACAGTTGAAGGCTGAGCTGGTGGTCTTCAAGGGGCTCATGAGTAACAACCTGTCGGAGCTGGACACCAAGATCCAGGAGAAAGCCATGAAGGTGGATATGGACATCTGCCGCCGCATCGACATCACCGCCAAGCTCTGCGATGTGGCTCAGCAGCGCAACTGCGAGGACATGATCCAGATGTTCCAGAAGAAGCTGTCTCTGCACTTGTCTCCCATTAAGGTCCCATCCATGGGGGGGCGGAAGCGGGAGCGCAAGGCTGCCGTCGAGGAGGACACCTCCCTGTCGGAGAGTGAGGGGCCCCGCCAGCCCGATGGGGATGAGGAGGAGAGCACAGCCCTCAGCATCAACGAGGAGATGCAGCGCATGCTCAACCAGCTGAGGGAGTATGATTTTGAGGACGACTGTGACAGCCTGACTTGGGAGGAGACTGAGGAGACCCTGCTGCTTTGGGAGGATTTCTCAGGCTATGCCATGGCAGCTGCAGAGGCCCAGGGAGAGCAGCAGGAAGATAGCCTGGAGAAGGTGATTAAAGATACGGAGTCCCTGTTCAAAACCCGGGAGAAGGAGTATCAGGAGACCATTGACCAGATAGAGCTGGAGTTGGCCACGGCCAAGAACGACATGAACCGGCACCTGCACGAGTACATGGAGATGTGCAGCATGAAGCGCGGCCTGGACGTGCAGATGGAGACCTGCCGCCGGCTCATCACCCAGTCTGGAGACCGAAAGTCTCCTGCTTTCACTGCGGTCCCGCTTAGCGACCCGCCGCCGCCGCCAAGCGAGGCTGAGGACTCCGATCGCGATGTCTCATCTGACAGCTCCATGAGATAG
Amino sequence
MNPLFGPNLFLLQQEQQGLAGPLGDSLGGDHFAGGGDLPPAPLSPAGPAAYSPPGPGPAPPAAMALRNDLGSNINVLKTLNLRFRCFLAKVHELERRNRLLEKQLQQALEEGKQGRRGLGRRDQAVQTGFVSPIRPLGLQLGARPAAVCSPSARVLGSPARSPAGPLAPSAASLSSSSTSTSTTYSSSARFMPGTIWSFSHARRLGPGLEPTLVQGPGLSWVHPDGVGVQIDTITPEIRALYNVLAKVKRERDEYKRRWEEEYTVRIQLQDRVNELQEEAQEADACQEELALKVEQLKAELVVFKGLMSNNLSELDTKIQEKAMKVDMDICRRIDITAKLCDVAQQRNCEDMIQMFQKKLSLHLSPIKVPSMGGRKRERKAAVEEDTSLSESEGPRQPDGDEEESTALSINEEMQRMLNQLREYDFEDDCDSLTWEETEETLLLWEDFSGYAMAAAEAQGEQQEDSLEKVIKDTESLFKTREKEYQETIDQIELELATAKNDMNRHLHEYMEMCSMKRGLDVQMETCRRLITQSGDRKSPAFTAVPLSDPPPPPSEAEDSDRDVSSDSSMR*