ENST00000549162.5 SCAF11

Information
Transcript ID
ENST00000549162.5
Genome
hg38
Position
chr12:45,922,048-45,934,510
Strand
-
CDS length
3,816
Amino acid length
1,272
Gene symbol
SCAF11
Gene type
protein-coding
Gene description
SR-related CTD associated factor 11
Gene Entrez Gene ID
9169
Variants

Display target variant


Search Word
Target data :
MGeND data only
Category :
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Variant name Gene AA change CDS Japanese
frequency		 TogoVar MGeND Genome ClinVar CIViC evidence DisGeNET entry COSMIC
occurrence		 Prediction
Entry Origin Type Annotation Entry Origin Annotation
Search Word
Target data :
MGeND data only
Category :
Search word :
Filtering :
Name MGeND Type Genome Size Chromosome Start Stop Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Search Word
Target data :
MGeND data only
Category :
Search word :
Filtering :
Name MGeND Type Genome Gene symbol Chromosome Genomic start Genomic stop Strand Ref Alt ClinVar Origin Entry CIViC evidence DisGeNET entry
Entry Origin Type Annotation
Exon
Exon number Start Stop
9 45,922,048 45,922,194
8 45,922,463 45,922,582
7 45,922,936 45,923,154
6 45,924,728 45,925,074
5 45,926,142 45,928,859
4 45,931,506 45,931,612
3 45,933,131 45,933,232
2 45,934,176 45,934,285
1 45,934,447 45,934,510
CDS
Exon number Type Start Stop
9 CDS 45,922,048 45,922,194
8 CDS 45,922,463 45,922,582
7 CDS 45,922,936 45,923,154
6 CDS 45,924,728 45,925,074
5 CDS 45,926,142 45,928,859
4 CDS 45,931,506 45,931,612
3 CDS 45,933,131 45,933,232
2 CDS 45,934,176 45,934,231
Other genome
Genome Chromosome Start End Links
hg19 chr12 46,315,831 46,328,293 Link
CDS sequence
ATGTTTTCTTCTGTTAGCCACTCTGGAGAATCTTCCTTTACCTATAGAGCTTATTGTACAGAATTTATAGAAGCCAGTGAAATCAGTGCATTGATTAGGCAGAAGAGACATGAACTGGAATTGTCATGGTTTCCTGATACATTACCTGGAATTGGAAGAATTGGTTTTATACCCTGGAATGTTGAAACAGAAGTCCTTCCTCTCATTTCTTCTGTGTTGCCAAGAACTATTTTTCCAACAAGTACCATATCTTTCGAACATTTTGGTACTTCTTGCAAGGGATATGCATTAGCACATACTCAAGAAGGGGAAGAAAAGAAGCAAACTTCTGGTACATCAAATACCAGAGGATCAAGACGAAAACCTGCAATGACAACTCCTACAAGGAGGTCTACACGTAACACAAGAGCTGAAACAGCCAGTCAGTCTCAGAGATCCCCAATATCAGACAATTCTGGGTGTGATGCCCCAGGTAACAGTAATCCATCTTTAAGTGTTCCCTCTTCAGCTGAGTCAGAAAAGCAAACAAGACAGGCTCCAAAACGGAAGTCTGTAAGAAGAGGAAGAAAACCACCTTTACTGAAAAAGAAACTTCGGAGCTCTGTAGCTGCCCCTGAAAAATCATCTTCCAATGATTCAGTAGATGAAGAAACAGCAGAATCTGACACATCACCTGTGTTAGAAAAAGAGCACCAACCAGATGTAGACAGTAGTAACATTTGTACTGTGCAGACTCATGTAGAAAACCAGTCTGCTAATTGCTTGAAAAGTTGCAATGAGCAAATAGAAGAAAGTGAGAAGCATACTGCAAATTATGATACAGAGGAAAGAGTAGGATCTTCATCTTCTGAGTCTTGTGCTCAAGATCTTCCTGTGCTAGTTGGTGAGGAAGGGGAAGTTAAAAAACTCGAGAATACAGGTATAGAGGCTAATGTTTTGTGTTTGGAAAGTGAGATTTCTGAAAATATTCTTGAAAAAGGAGGTGATCCATTGGAAAAGCAAGACCAGATATCTGGACTTTCACAATCAGAGGTAAAGACAGATGTATGTACAGTTCATCTTCCAAATGATTTTCCTACATGTTTAACATCTGAAAGCAAAGTGTACCAACCTGTATCTTGTCCCCTAAGTGACTTATCTGAGAATGTAGAGTCAGTGGTTAATGAAGAAAAAATAACAGAGAGTTCCCTAGTAGAAATTACTGAACATAAAGATTTTACACTAAAAACAGAGGAGCTTATAGAGAGCCCCAAGTTAGAATCTTCTGAGGGTGAAATTATACAGACAGTGGACAGACAATCTGTTAAGAGCCCAGAGGTTCAATTGCTTGGGCATGTTGAAACTGAAGATGTAGAAATAATTGCAACATGTGATACTTTTGGGAATGAAGATTTCAATAATATTCAAGACTCTGAAAATAACTTACTAAAAAATAATCTTCTGAACACCAAATTGGAAAAATCTTTAGAAGAAAAGAATGAATCGCTGACCGAACATCCTAGATCTACAGAGTTGCCTAAAACACACATTGAACAGATTCAGAAGCATTTTAGTGAGGACAACAATGAAATGATACCTATGGAGTGTGATTCATTTTGCAGTGACCAAAATGAATCTGAAGTTGAACCATCTGTAAATGCTGATCTTAAACAAATGAATGAAAATTCTGTGACACACTGTTCTGAAAATAATATGCCGTCTTCTGATCTTGCGGATGAAAAGGTTGAAACTGTTTCTCAACCATCTGAAAGCCCAAAAGATACCATAGATAAAACCAAAAAGCCTCGTACTCGAAGATCTAGATTTCATTCTCCATCTACAACTTGGTCACCCAACAAAGACACTCCACAAGAAAAGAAGCGGCCCCAGTCTCCATCTCCCAGAAGAGAAACTGGGAAAGAAAGCAGGAAGTCTCAATCACCATCTCCTAAGAATGAGTCAGCCAGAGGCCGGAAAAAATCCCGTTCTCAGTCCCCAAAAAAGGATATTGCAAGAGAAAGGAGGCAATCTCAGTCTCGGTCTCCAAAAAGGGATACTACTAGGGAAAGCAGAAGATCTGAATCACTGTCCCCAAGAAGAGAAACTTCTAGAGAGAACAAAAGATCTCAGCCAAGAGTGAAAGATTCTTCCCCAGGAGAAAAATCCAGGTCCCAGAGCAGAGAACGAGAAAGTGATAGAGATGGGCAGAGGAGAGAGAGAGAAAGGAGAACCAGAAAGTGGTCTAGGTCCAGATCTCATTCTAGGTCCCCCTCAAGATGTAGAACAAAAAGTAAGAGTTCATCATTTGGTAGAATTGACAGAGATAGTTACTCTCCCCGGTGGAAGGGAAGATGGGCAAATGATGGTTGGAGATGTCCACGAGGAAATGATCGGTACAGAAAGAATGACCCAGAGAAACAGAATGAAAATACAAGAAAAGAAAAAAATGACATCCATCTAGATGCTGATGATCCAAATTCTGCTGACAAACATAGAAATGACTGTCCCAATTGGATAACAGAAAAAATAAACTCTGGGCCTGATCCAAGAACCAGAAATCCAGAAAAGTTGAAAGAGTCTCATTGGGAAGAAAATAGAAATGAAAATTCAGGAAATTCTTGGAATAAAAACTTTGGTTCTGGTTGGGTATCTAACCGTGGTAGAGGCAGAGGCAACCGTGGCAGAGGCACTTACAGAAGTAGTTTTGCCTATAAAGATCAGAATGAAAATCGGTGGCAAAATCGAAAACCCCTCTCAGGGAATTCAAACAGTTCAGGGAGTGAATCTTTCAAGTTTGTGGAACAGCAATCCTATAAGCGAAAAAGTGAACAGGAGTTCTCATTTGATACACCAGCAGATAGATCTGGATGGACATCTGCATCCAGCTGGGCCGTGAGAAAGACTTTGCCAGCAGATGTACAAAACTACTACTCACGACGAGGCAGAAATTCTTCAGGTCCACAGTCTGGATGGATGAAACAAGAGGAGGAAACATCTGGACAGGATTCTAGCCTAAAAGACCAAACAAACCAGCAAGTTGATGGTTCTCAGCTACCTATAAATATGATGCAACCGCAAATGAATGTAATGCAGCAACAAATGAATGCACAACACCAGCCTATGAATATCTTCCCATATCCAGTGGGTGTTCATGCTCCTTTGATGAACATCCAACGCAATCCATTTAACATTCATCCTCAGCTACCCTTGCATCTCCACACAGGAGTGCCCCTCATGCAGGTAGCCACTCCTACCAGTGTATCTCAGGGACTACCACCACCACCACCCCCTCCCCCACCATCCCAACAAGTCAACTACATTGCTTCACAACCAGATGGAAAGCAATTGCAGGGTATTCCTAGTTCTTCTCATGTAAGTAATAACATGAGTACACCAGTTTTGCCTGCTCCGACAGCAGCCCCAGGAAATACGGGAATGGTTCAGGGACCAAGTTCTGGTAATACTTCGTCATCAAGTCACAGCAAAGCCTCTAATGCTGCTGTAAAATTGGCAGAAAGCAAAGTAAGTGTTGCAGTGGAAGCCAGCGCAGATAGCTCGAAGACAGACAAGAAATTGCAAATTCAAGAAAAAGCAGCACAAGAGGTAAAATTGGCCATCAAGCCATTTTACCAAAATAAAGATATCACCAAGGAAGAATATAAAGAAATTGTACGGAAAGCAGTAGATAAAGTTTGTCATAGTAAGAGTGGAGAAGTAAATTCTACTAAAGTGGCAAATCTGGTTAAAGCCTATGTAGACAAATACAAATATTCACGGAAGGGGAGCCAAAAGAAAACTCTGGAAGAACCTGTGTCTACTGAAAAAAACATAGGCTGA
Amino sequence
MFSSVSHSGESSFTYRAYCTEFIEASEISALIRQKRHELELSWFPDTLPGIGRIGFIPWNVETEVLPLISSVLPRTIFPTSTISFEHFGTSCKGYALAHTQEGEEKKQTSGTSNTRGSRRKPAMTTPTRRSTRNTRAETASQSQRSPISDNSGCDAPGNSNPSLSVPSSAESEKQTRQAPKRKSVRRGRKPPLLKKKLRSSVAAPEKSSSNDSVDEETAESDTSPVLEKEHQPDVDSSNICTVQTHVENQSANCLKSCNEQIEESEKHTANYDTEERVGSSSSESCAQDLPVLVGEEGEVKKLENTGIEANVLCLESEISENILEKGGDPLEKQDQISGLSQSEVKTDVCTVHLPNDFPTCLTSESKVYQPVSCPLSDLSENVESVVNEEKITESSLVEITEHKDFTLKTEELIESPKLESSEGEIIQTVDRQSVKSPEVQLLGHVETEDVEIIATCDTFGNEDFNNIQDSENNLLKNNLLNTKLEKSLEEKNESLTEHPRSTELPKTHIEQIQKHFSEDNNEMIPMECDSFCSDQNESEVEPSVNADLKQMNENSVTHCSENNMPSSDLADEKVETVSQPSESPKDTIDKTKKPRTRRSRFHSPSTTWSPNKDTPQEKKRPQSPSPRRETGKESRKSQSPSPKNESARGRKKSRSQSPKKDIARERRQSQSRSPKRDTTRESRRSESLSPRRETSRENKRSQPRVKDSSPGEKSRSQSRERESDRDGQRRERERRTRKWSRSRSHSRSPSRCRTKSKSSSFGRIDRDSYSPRWKGRWANDGWRCPRGNDRYRKNDPEKQNENTRKEKNDIHLDADDPNSADKHRNDCPNWITEKINSGPDPRTRNPEKLKESHWEENRNENSGNSWNKNFGSGWVSNRGRGRGNRGRGTYRSSFAYKDQNENRWQNRKPLSGNSNSSGSESFKFVEQQSYKRKSEQEFSFDTPADRSGWTSASSWAVRKTLPADVQNYYSRRGRNSSGPQSGWMKQEEETSGQDSSLKDQTNQQVDGSQLPINMMQPQMNVMQQQMNAQHQPMNIFPYPVGVHAPLMNIQRNPFNIHPQLPLHLHTGVPLMQVATPTSVSQGLPPPPPPPPPSQQVNYIASQPDGKQLQGIPSSSHVSNNMSTPVLPAPTAAPGNTGMVQGPSSGNTSSSSHSKASNAAVKLAESKVSVAVEASADSSKTDKKLQIQEKAAQEVKLAIKPFYQNKDITKEEYKEIVRKAVDKVCHSKSGEVNSTKVANLVKAYVDKYKYSRKGSQKKTLEEPVSTEKNIG*