chr13:32911662:AGAAA> Detail (hg19) (BRCA2)

Information

Genome

Assembly Position
hg19 chr13:32,911,662-32,911,666
hg38 chr13:32,337,525-32,337,529 

HGVS

Type Transcript Protein
RefSeq NM_000059.3:c.3170_3174delAGAAA NP_000050.2:p.Lys1057ThrfsTer8
Ensemble ENST00000380152.8:c.3170_3174delAGAAA ENST00000380152.8:p.Lys1057ThrfsTer8
ENST00000530893.7:c.2801_2805delAGAAA ENST00000530893.7:p.Lys934ThrfsTer8
Summary

MGeND

Clinical significance Pathogenic
Variant entry 1
GWAS entry
Disease area statistics Show details

Frequency

JP HGVD:[No Data.]
ToMMo:[No Data.]
NCBN:[No Data.]
NCBN(Hondo):[No Data.]
NCBN(Ryukyu):[No Data.]
East asia ExAC:<0.001

Prediction

ClinVar

Clinical Significance Pathogenic
Review star
Show details
Links
Type Database ID Link
Gene MIM 600185 OMIM
HGNC 1101 HGNC
Ensembl ENSG00000139618 Ensembl
NCBI NCBI
Gene Cards Gene Cards
OncoKB OncoKB
Type Database ID Link
Variant TogoVar
COSMIC
MONDO
Disease area statistics
MGeND
Clinical significance Last evaluated Condition Origin Submission ID Submitter Institute Citation Comment Image
Pathogenic other germline MGS000001
(TMGS000154) 		Kenjiro Kosaki Keio University
ClinVar
Clinical significance Last evaluated Review status Condition Origin Links
Pathogenic 2016-09-08 reviewed by expert panel Breast-ovarian cancer, familial, susceptibility to, 2 germline unknown Detail
Pathogenic 2024-01-30 criteria provided, multiple submitters, no conflicts hereditary breast ovarian cancer syndrome germline Detail
Pathogenic 2023-03-20 criteria provided, multiple submitters, no conflicts Hereditary cancer-predisposing syndrome germline Detail
Pathogenic 2022-11-30 criteria provided, multiple submitters, no conflicts not provided unknown germline Detail
Pathogenic 2023-06-09 criteria provided, single submitter Breast and/or ovarian cancer germline Detail
Pathogenic no assertion criteria provided unknown Detail
Pathogenic 2023-08-31 criteria provided, single submitter Familial cancer of breast unknown Detail
CIViC
[No Data.]
DisGeNET
Score Disease name Description Source Pubmed Links
0.240 Breast-ovarian cancer, familial, susceptibility to, 2 NA CLINVAR Detail
0.391 Hereditary Breast and Ovarian Cancer Syndrome NA CLINVAR Detail
0.128 Neoplastic Syndromes, Hereditary NA CLINVAR Detail
Annotation

Annotations

DescrptionSourceLinks
NM_000059.4(BRCA2):c.3170_3174del (p.Lys1057fs) AND Breast-ovarian cancer, familial, susceptibility ... ClinVar Detail
NM_000059.4(BRCA2):c.3170_3174del (p.Lys1057fs) AND Hereditary breast ovarian cancer syndrome ClinVar Detail
NM_000059.4(BRCA2):c.3170_3174del (p.Lys1057fs) AND Hereditary cancer-predisposing syndrome ClinVar Detail
NM_000059.4(BRCA2):c.3170_3174del (p.Lys1057fs) AND not provided ClinVar Detail
NM_000059.4(BRCA2):c.3170_3174del (p.Lys1057fs) AND Breast and/or ovarian cancer ClinVar Detail
NM_000059.4(BRCA2):c.3170_3174del (p.Lys1057fs) AND Malignant tumor of breast ClinVar Detail
NM_000059.4(BRCA2):c.3170_3174del (p.Lys1057fs) AND Familial cancer of breast ClinVar Detail
NA DisGeNET Detail
NA DisGeNET Detail
NA DisGeNET Detail

Overlapped Transcript Coordinates

Gene Transcript ID Exon Number Chromosome Start Stop Type Amino Mutation Transcript Position Links

Overlapped Transcript

Gene Transcript ID Chromosome Start Stop Links
Gene
-
dbSNP
rs80359373 dbSNP
Genome
hg19
Position
chr13:32,911,662-32,911,666
Variant Type
snv
Reference Allele
AGAAA
Alternative Allele
-
East Asian Chromosome Counts (ExAC)
8622
East Asian Allele Counts (ExAC)
0
East Asian Heterozygous Counts (ExAC)
0
East Asian Homozygous Counts (ExAC)
0
East Asian Allele Frequency (ExAC)
0.0
Chromosome Counts in All Race (ExAC)
120006
Allele Counts in All Race (ExAC)
3
Heterozygous Counts in All Race (ExAC)
3
Homozygous Counts in All Race (ExAC)
0
Allele Frequency in All Race (ExAC)
2.4998750062496874E-5
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