chr13:32914291:CCAA> Detail (hg19) (BRCA2)

Go to:

Summary
Information
Links
Disease area statistics
MGeND
ClinVar
CIViC
DisGeNET
Annotation
Genome browser

Information

Genome

Assembly	Position
hg19	chr13:32,914,291-32,914,294
hg38	chr13:32,340,154-32,340,157

HGVS

BRCA2

Type	Transcript	Protein
RefSeq	NM_000059.3:c.5799_5802delCCAA	NP_000050.2:p.Asn1933LysfsTer29
Ensemble	ENST00000544455.6:c.5799_5802delCCAA	ENST00000544455.6:p.Asn1933LysfsTer29
	ENST00000380152.8:c.5799_5802delCCAA	ENST00000380152.8:p.Asn1933LysfsTer29
	ENST00000530893.7:c.5430_5433delCCAA	ENST00000530893.7:p.Asn1810LysfsTer29
	ENST00000700202.2:c.5799_5802delCCAA	ENST00000700202.2:p.Asn1933LysfsTer29
	ENST00000713680.1:c.5799_5802delCCAA	ENST00000713680.1:p.Asn1933LysfsTer29
	ENST00000713678.1:c.5799_5802delCCAA	ENST00000713678.1:p.Asn1933LysfsTer29

Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics	Show details

Frequency

[No Data.]

Prediction

ClinVar

Clinical Significance	Pathogenic
Review star
Show details

Links

BRCA2

Type	Database	ID	Link
Gene	MIM	600185	OMIM
	HGNC	1101	HGNC
	Ensembl	ENSG00000139618	Ensembl
	NCBI		NCBI
	Gene Cards		Gene Cards
	OncoKB		OncoKB

Type	Database	ID	Link
Variant	TogoVar
	COSMIC
	MONDO

Disease area statistics

[No Data.]

MGeND

[No Data.]

ClinVar

Clinical significance	Last evaluated	Review status	Condition	Origin	Links
Pathogenic	2023-10-16	criteria provided, multiple submitters, no conflicts	hereditary breast ovarian cancer syndrome	germline	Detail
Pathogenic	2016-09-08	reviewed by expert panel	Breast-ovarian cancer, familial, susceptibility to, 2	germline inherited unknown	Detail
Pathogenic	2023-11-13	criteria provided, multiple submitters, no conflicts	Hereditary cancer-predisposing syndrome	germline	Detail
Pathogenic	2023-04-19	criteria provided, multiple submitters, no conflicts	not provided	germline unknown	Detail
Pathogenic	2017-02-23	criteria provided, single submitter	Familial cancer of breast	germline	Detail

CIViC

[No Data.]

DisGeNET

Score	Disease name	Description	Source	Pubmed	Links
0.240	Breast-ovarian cancer, familial, susceptibility to, 2	NA	CLINVAR		Detail
0.174	Breast Cancer, Familial	NA	CLINVAR		Detail
0.391	Hereditary Breast and Ovarian Cancer Syndrome	NA	CLINVAR		Detail
0.128	Neoplastic Syndromes, Hereditary	NA	CLINVAR		Detail

Annotation

Annotations

Descrption	Source	Links
NM_000059.4(BRCA2):c.5799_5802del (p.Asn1933fs) AND Hereditary breast ovarian cancer syndrome	ClinVar	Detail
NM_000059.4(BRCA2):c.5799_5802del (p.Asn1933fs) AND Breast-ovarian cancer, familial, susceptibility ...	ClinVar	Detail
NM_000059.4(BRCA2):c.5799_5802del (p.Asn1933fs) AND Hereditary cancer-predisposing syndrome	ClinVar	Detail
NM_000059.4(BRCA2):c.5799_5802del (p.Asn1933fs) AND not provided	ClinVar	Detail
NM_000059.4(BRCA2):c.5799_5802del (p.Asn1933fs) AND Familial cancer of breast	ClinVar	Detail
NA	DisGeNET	Detail
NA	DisGeNET	Detail
NA	DisGeNET	Detail
NA	DisGeNET	Detail

Overlapped Transcript Coordinates

Gene	Transcript ID	Exon Number	Chromosome	Start	Stop	Type	Amino Mutation	Transcript Position	Links

Overlapped Transcript

Gene	Transcript ID	Chromosome	Start	Stop	Links

Gene: -
dbSNP: rs80359538 dbSNP
Genome: hg19
Position: chr13:32,914,291-32,914,294
Variant Type: snv
Reference Allele: CCAA
Alternative Allele: -

Genome browser