chr5:112175903:GA> Detail (hg19) (APC)

Go to:

Summary
Information
Links
Disease area statistics
MGeND
ClinVar
CIViC
DisGeNET
Annotation
Genome browser

Information

Genome

Assembly	Position
hg19	chr5:112,175,903-112,175,904
hg38	chr5:112,840,206-112,840,207

HGVS

APC

Type	Transcript	Protein
RefSeq	NM_001127510.2:c.4612_4613delGA	NP_001120982.1:p.Glu1538IlefsTer5
	NM_000038.5:c.4612_4613delGA	NP_000029.2:p.Glu1538IlefsTer5
	NM_001127511.2:c.4558_4559delGA	NP_001120983.2:p.Glu1520IlefsTer5
Ensemble	ENST00000512211.7:c.4612_4613delGA	ENST00000512211.7:p.Glu1538IlefsTer5
	ENST00000508376.6:c.4612_4613delGA	ENST00000508376.6:p.Glu1538IlefsTer5
	ENST00000257430.9:c.4612_4613delGA	ENST00000257430.9:p.Glu1538IlefsTer5
	ENST00000504915.3:c.4666_4667delGA	ENST00000504915.3:p.Glu1556IlefsTer5
	ENST00000507379.6:c.4558_4559delGA	ENST00000507379.6:p.Glu1520IlefsTer5
	ENST00000713638.1:c.2594_2595delGA
	ENST00000509732.6:c.4612_4613delGA	ENST00000509732.6:p.Glu1538IlefsTer5
	ENST00000713639.1:c.4294_4295delGA	ENST00000713639.1:p.Glu1432IlefsTer5

Summary

MGeND

Clinical significance	not provided
Variant entry	1
GWAS entry
Disease area statistics	Show details

Frequency

[No Data.]

Prediction

ClinVar

Clinical Significance	Pathogenic
Review star
Show details

Links

APC

Type	Database	ID	Link
Gene	MIM	611731	OMIM
	HGNC	583	HGNC
	Ensembl	ENSG00000134982	Ensembl
	NCBI		NCBI
	Gene Cards		Gene Cards
	OncoKB		OncoKB

Type	Database	ID	Link
Variant	TogoVar
	COSMIC	COSM4166194	COSMIC
	MONDO

Disease area statistics

MGeND

Clinical significance	Last evaluated	Condition	Origin	Submission ID	Submitter	Institute	Citation	Comment	Image
not provided		caecum	not provided	MGS000041 (TMGS000094)	Hitoshi Nakagama	National Cancer Center Japan

ClinVar

Clinical significance	Last evaluated	Review status	Condition	Origin	Links
Pathogenic	1997-01-01	no assertion criteria provided	Gardner syndrome	germline	Detail
Pathogenic	2020-07-20	criteria provided, single submitter	not provided	germline	Detail
Pathogenic	2015-07-28	criteria provided, single submitter	Hereditary cancer-predisposing syndrome	germline	Detail
Pathogenic	2021-05-07	criteria provided, multiple submitters, no conflicts	familial adenomatous polyposis 1	unknown	Detail
Pathogenic	2021-03-30	criteria provided, single submitter	Desmoid disease, hereditary,Gastric adenocarcinoma and proximal polyposis of the stomach,familial adenomatous polyposis 1,hepatocellular carcinoma,Gastric cancer,colorectal cancer	germline	Detail
Pathogenic	2021-03-30	criteria provided, single submitter	Desmoid disease, hereditary,Gastric adenocarcinoma and proximal polyposis of the stomach,familial adenomatous polyposis 1,hepatocellular carcinoma,Gastric cancer,colorectal cancer	germline	Detail
Pathogenic	2021-03-30	criteria provided, single submitter	Desmoid disease, hereditary,Gastric adenocarcinoma and proximal polyposis of the stomach,familial adenomatous polyposis 1,hepatocellular carcinoma,Gastric cancer,colorectal cancer	germline	Detail
Pathogenic	2021-03-30	criteria provided, single submitter	Desmoid disease, hereditary,Gastric adenocarcinoma and proximal polyposis of the stomach,familial adenomatous polyposis 1,hepatocellular carcinoma,Gastric cancer,colorectal cancer	germline	Detail
Pathogenic	2021-03-30	criteria provided, single submitter	Desmoid disease, hereditary,Gastric adenocarcinoma and proximal polyposis of the stomach,familial adenomatous polyposis 1,hepatocellular carcinoma,Gastric cancer,colorectal cancer	germline	Detail
Pathogenic	2021-03-30	criteria provided, single submitter	Desmoid disease, hereditary,Gastric adenocarcinoma and proximal polyposis of the stomach,familial adenomatous polyposis 1,hepatocellular carcinoma,Gastric cancer,colorectal cancer	germline	Detail
Pathogenic	2023-12-13	criteria provided, multiple submitters, no conflicts	familial adenomatous polyposis 1	germline unknown	Detail
Pathogenic	2020-07-28	criteria provided, single submitter	Familial multiple polyposis syndrome	germline	Detail

CIViC

[No Data.]

DisGeNET

Score	Disease name	Description	Source	Pubmed	Links
0.245	Gardner syndrome	NA	CLINVAR		Detail

Annotation

Annotations

Descrption	Source	Links
NM_000038.6(APC):c.4612_4613del (p.Glu1538fs) AND Gardner syndrome	ClinVar	Detail
NM_000038.6(APC):c.4612_4613del (p.Glu1538fs) AND not provided	ClinVar	Detail
NM_000038.6(APC):c.4612_4613del (p.Glu1538fs) AND Hereditary cancer-predisposing syndrome	ClinVar	Detail
NM_000038.6(APC):c.4612_4613del (p.Glu1538fs) AND Familial adenomatous polyposis 1	ClinVar	Detail
NM_000038.6(APC):c.4612_4613del (p.Glu1538fs) AND multiple conditions	ClinVar	Detail
NM_000038.6(APC):c.4612_4613del (p.Glu1538fs) AND multiple conditions	ClinVar	Detail
NM_000038.6(APC):c.4612_4613del (p.Glu1538fs) AND multiple conditions	ClinVar	Detail
NM_000038.6(APC):c.4612_4613del (p.Glu1538fs) AND multiple conditions	ClinVar	Detail
NM_000038.6(APC):c.4612_4613del (p.Glu1538fs) AND multiple conditions	ClinVar	Detail
NM_000038.6(APC):c.4612_4613del (p.Glu1538fs) AND multiple conditions	ClinVar	Detail
NM_000038.6(APC):c.4612_4613del (p.Glu1538fs) AND Familial adenomatous polyposis 1	ClinVar	Detail
NM_000038.6(APC):c.4612_4613del (p.Glu1538fs) AND Familial multiple polyposis syndrome	ClinVar	Detail
NA	DisGeNET	Detail

Overlapped Transcript Coordinates

Gene	Transcript ID	Exon Number	Chromosome	Start	Stop	Type	Amino Mutation	Transcript Position	Links

Overlapped Transcript

Gene	Transcript ID	Chromosome	Start	Stop	Links

Gene: -
dbSNP: rs387906236 dbSNP
Genome: hg19
Position: chr5:112,175,903-112,175,904
Variant Type: snv
Reference Allele: GA
Alternative Allele: -

Genome browser