chr5:112175960:AT> Detail (hg19) (APC)

Go to:

Summary
Information
Links
Disease area statistics
MGeND
ClinVar
CIViC
DisGeNET
Annotation
Genome browser

Information

Genome

Assembly	Position
hg19	chr5:112,175,960-112,175,961
hg38	chr5:112,840,263-112,840,264

HGVS

APC

Type	Transcript	Protein
RefSeq	NM_000038.5:c.4669_4670delAT	NP_000029.2:p.Ile1557Ter
	NM_001127511.2:c.4615_4616delAT	NP_001120983.2:p.Ile1539Ter
	NM_001127510.2:c.4669_4670delAT	NP_001120982.1:p.Ile1557Ter
Ensemble	ENST00000257430.9:c.4669_4670delAT	ENST00000257430.9:p.Ile1557Ter
	ENST00000504915.3:c.4723_4724delAT	ENST00000504915.3:p.Ile1575Ter
	ENST00000512211.7:c.4669_4670delAT	ENST00000512211.7:p.Ile1557Ter
	ENST00000713638.1:c.2651_2652delAT
	ENST00000713639.1:c.4351_4352delAT	ENST00000713639.1:p.Ile1451Ter
	ENST00000507379.6:c.4615_4616delAT	ENST00000507379.6:p.Ile1539Ter
	ENST00000508376.6:c.4669_4670delAT	ENST00000508376.6:p.Ile1557Ter
	ENST00000509732.6:c.4669_4670delAT	ENST00000509732.6:p.Ile1557Ter

Summary

MGeND

Clinical significance	not provided
Variant entry	1
GWAS entry
Disease area statistics	Show details

Frequency

[No Data.]

Prediction

ClinVar

Clinical Significance	Pathogenic
Review star
Show details

Links

APC

Type	Database	ID	Link
Gene	MIM	611731	OMIM
	HGNC	583	HGNC
	Ensembl	ENSG00000134982	Ensembl
	NCBI		NCBI
	Gene Cards		Gene Cards
	OncoKB		OncoKB

Type	Database	ID	Link
Variant	TogoVar
	COSMIC	COSM6853192	COSMIC
	MONDO

Disease area statistics

MGeND

Clinical significance	Last evaluated	Condition	Origin	Submission ID	Submitter	Institute	Citation	Comment	Image
not provided		jejunum	not provided	MGS000041 (TMGS000094)	Hitoshi Nakagama	National Cancer Center Japan

ClinVar

Clinical significance	Last evaluated	Review status	Condition	Origin	Links
Pathogenic	2014-11-11	criteria provided, single submitter	Hereditary cancer-predisposing syndrome	germline	Detail
Pathogenic	2016-07-20	criteria provided, single submitter	not provided	germline	Detail
Pathogenic	2023-07-07	criteria provided, multiple submitters, no conflicts	familial adenomatous polyposis 1	unknown	Detail
Pathogenic	2023-05-11	criteria provided, multiple submitters, no conflicts	familial adenomatous polyposis 1	germline unknown	Detail

CIViC

[No Data.]

DisGeNET

Score	Disease name	Description	Source	Pubmed	Links
0.121	Neoplastic Syndromes, Hereditary	NA	CLINVAR		Detail

Annotation

Annotations

Descrption	Source	Links
NM_000038.6(APC):c.4669_4670del (p.Thr1556_Ile1557insTer) AND Hereditary cancer-predisposing syndrom...	ClinVar	Detail
NM_000038.6(APC):c.4669_4670del (p.Thr1556_Ile1557insTer) AND not provided	ClinVar	Detail
NM_000038.6(APC):c.4669_4670del (p.Thr1556_Ile1557insTer) AND Familial adenomatous polyposis 1	ClinVar	Detail
NM_000038.6(APC):c.4669_4670del (p.Thr1556_Ile1557insTer) AND Familial adenomatous polyposis 1	ClinVar	Detail
NA	DisGeNET	Detail

Overlapped Transcript Coordinates

Gene	Transcript ID	Exon Number	Chromosome	Start	Stop	Type	Amino Mutation	Transcript Position	Links

Overlapped Transcript

Gene	Transcript ID	Chromosome	Start	Stop	Links

Gene: -
dbSNP: rs786201118 dbSNP
Genome: hg19
Position: chr5:112,175,960-112,175,961
Variant Type: snv
Reference Allele: AT
Alternative Allele: -

Genome browser