chr10:89692905:G>C Detail (hg19) (PTEN)

Information

Genome

Assembly Position
hg19 chr10:89,692,905-89,692,905
hg38 chr10:87,933,148-87,933,148 View the variant detail on this assembly version.

HGVS

Type Transcript Protein
RefSeq NM_000314.6:c.389G>C NP_000305.3:p.Arg130Pro
NM_001304717.2:c.389G>C NP_001291646.2:p.Arg130Pro
NM_001304718.1:c.389G>C NP_001291647.1:p.Arg130Pro
Summary

MGeND

Clinical significance not provided
Variant entry 1
GWAS entry
Disease area statistics Show details

Frequency

[No Data.]

Prediction

ClinVar

Clinical Significance Pathogenic
Review star
Show details
Links
Type Database ID Link
Gene MIM 601728 OMIM
HGNC 9588 HGNC
Ensembl ENSG00000171862 Ensembl
NCBI NCBI
Gene Cards Gene Cards
OncoKB OncoKB
Type Database ID Link
Variant TogoVar
COSMIC COSM5277 COSMIC
MONDO
Disease area statistics
MGeND
Clinical significance Last evaluated Condition Origin Submission ID Submitter Institute Citation Comment Image
not provided bronchus or lung, unspecified not provided MGS000042
(TMGS000093) 		Hitoshi Nakagama National Cancer Center Japan
ClinVar
Clinical significance Last evaluated Review status Condition Origin Links
Likely pathogenic 2018-03-29 criteria provided, single submitter Hereditary cancer-predisposing syndrome germline Detail
Likely pathogenic 2016-05-31 no assertion criteria provided Malignant melanoma of skin somatic Detail
Likely pathogenic 2016-05-31 no assertion criteria provided prostate adenocarcinoma somatic Detail
Likely pathogenic 2016-05-31 no assertion criteria provided uterine carcinosarcoma somatic Detail
Likely pathogenic 2016-05-31 no assertion criteria provided Squamous cell carcinoma of the head and neck somatic Detail
Likely pathogenic 2016-05-31 no assertion criteria provided Small cell lung carcinoma somatic Detail
Likely pathogenic 2016-05-31 no assertion criteria provided Breast neoplasm somatic Detail
Likely pathogenic 2016-05-31 no assertion criteria provided Neoplasm of uterine cervix somatic Detail
Likely pathogenic 2016-05-31 no assertion criteria provided Papillary renal cell carcinoma type 1 somatic Detail
Likely pathogenic 2016-05-31 no assertion criteria provided Neoplasm of the large intestine somatic Detail
Likely pathogenic 2016-05-31 no assertion criteria provided Malignant neoplasm of body of uterus somatic Detail
Likely pathogenic 2016-05-31 no assertion criteria provided glioblastoma somatic Detail
Likely pathogenic 2016-05-31 no assertion criteria provided Squamous cell lung carcinoma somatic Detail
Likely pathogenic 2016-05-31 no assertion criteria provided gastric adenocarcinoma somatic Detail
Pathogenic 2019-11-22 reviewed by expert panel PTEN hamartoma tumor syndrome germline Detail
CIViC
[No Data.]
DisGeNET
Score Disease name Description Source Pubmed Links
0.126 PTEN hamartoma tumor syndrome NA CLINVAR Detail
0.122 Neoplastic Syndromes, Hereditary NA CLINVAR Detail
Annotation

Annotations

DescrptionSourceLinks
NM_000314.8(PTEN):c.389G>C (p.Arg130Pro) AND Hereditary cancer-predisposing syndrome ClinVar Detail
NM_000314.8(PTEN):c.389G>C (p.Arg130Pro) AND Malignant melanoma of skin ClinVar Detail
NM_000314.8(PTEN):c.389G>C (p.Arg130Pro) AND Prostate adenocarcinoma ClinVar Detail
NM_000314.8(PTEN):c.389G>C (p.Arg130Pro) AND Uterine carcinosarcoma ClinVar Detail
NM_000314.8(PTEN):c.389G>C (p.Arg130Pro) AND Squamous cell carcinoma of the head and neck ClinVar Detail
NM_000314.8(PTEN):c.389G>C (p.Arg130Pro) AND Small cell lung carcinoma ClinVar Detail
NM_000314.8(PTEN):c.389G>C (p.Arg130Pro) AND Breast neoplasm ClinVar Detail
NM_000314.8(PTEN):c.389G>C (p.Arg130Pro) AND Neoplasm of uterine cervix ClinVar Detail
NM_000314.8(PTEN):c.389G>C (p.Arg130Pro) AND Papillary renal cell carcinoma type 1 ClinVar Detail
NM_000314.8(PTEN):c.389G>C (p.Arg130Pro) AND Neoplasm of the large intestine ClinVar Detail
NM_000314.8(PTEN):c.389G>C (p.Arg130Pro) AND Malignant neoplasm of body of uterus ClinVar Detail
NM_000314.8(PTEN):c.389G>C (p.Arg130Pro) AND Glioblastoma ClinVar Detail
NM_000314.8(PTEN):c.389G>C (p.Arg130Pro) AND Squamous cell lung carcinoma ClinVar Detail
NM_000314.8(PTEN):c.389G>C (p.Arg130Pro) AND Gastric adenocarcinoma ClinVar Detail
NM_000314.8(PTEN):c.389G>C (p.Arg130Pro) AND PTEN hamartoma tumor syndrome ClinVar Detail
NA DisGeNET Detail
NA DisGeNET Detail

Overlapped Transcript Coordinates

Gene Transcript ID Exon Number Chromosome Start Stop Type Amino Mutation Transcript Position Links

Overlapped Transcript

Gene Transcript ID Chromosome Start Stop Links
Gene
-
dbSNP
rs121909229 dbSNP
Genome
hg19
Position
chr10:89,692,905-89,692,905
Variant Type
snv
Reference Allele
G
Alternative Allele
C
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