chr10:89711874:G>A Detail (hg19) (PTEN)

Go to:

Summary
Information
Links
Disease area statistics
MGeND
ClinVar
CIViC
DisGeNET
Annotation
Genome browser

Information

Genome

Assembly	Position
hg19	chr10:89,711,874-89,711,874
hg38	chr10:87,952,117-87,952,117 View the variant detail on this assembly version.

HGVS

PTEN

Type	Transcript	Protein
RefSeq	NM_000314.6:c.493-1G>A
	NM_001304717.2:c.493-1G>A
	NM_001304718.1:c.493-1G>A
Ensemble	ENST00000371953.8:c.493-1G>A
	ENST00000472832.3:c.493-1G>A
	ENST00000688308.1:c.493-1G>A
	ENST00000700021.1:c.448-1G>A
	ENST00000700029.2:c.493-1G>A
	ENST00000713839.1:c.586-1G>A

Summary

MGeND

Clinical significance	not provided
Variant entry	2
GWAS entry
Disease area statistics	Show details

Frequency

[No Data.]

Prediction

ClinVar

Clinical Significance	Pathogenic
Review star
Show details

Links

PTEN

Type	Database	ID	Link
Gene	MIM	601728	OMIM
	HGNC	9588	HGNC
	Ensembl	ENSG00000171862	Ensembl
	NCBI		NCBI
	Gene Cards		Gene Cards
	OncoKB		OncoKB

Type	Database	ID	Link
Variant	TogoVar
	COSMIC
	MONDO

Disease area statistics

MGeND

Clinical significance	Last evaluated	Condition	Origin	Submission ID	Submitter	Institute	Citation	Comment	Image
not provided		ascending colon	not provided	MGS000040 (TMGS000095)	Hitoshi Nakagama	National Cancer Center Japan
not provided		extrahepatic bile duct	not provided	MGS000040 (TMGS000095)	Hitoshi Nakagama	National Cancer Center Japan

ClinVar

Clinical significance	Last evaluated	Review status	Condition	Origin	Links
Pathogenic	2016-02-04	criteria provided, single submitter	not provided	germline	Detail
Pathogenic	2022-10-28	criteria provided, single submitter	PTEN hamartoma tumor syndrome	germline	Detail
Pathogenic	2022-06-22	criteria provided, single submitter	Hereditary cancer-predisposing syndrome	germline	Detail
Pathogenic	2021-07-01	no assertion criteria provided	Gastric cancer	germline	Detail

CIViC

[No Data.]

DisGeNET

Score	Disease name	Description	Source	Pubmed	Links
0.122	Neoplastic Syndromes, Hereditary	NA	CLINVAR		Detail

Annotation

Annotations

Descrption	Source	Links
NM_000314.8(PTEN):c.493-1G>A AND not provided	ClinVar	Detail
NM_000314.8(PTEN):c.493-1G>A AND PTEN hamartoma tumor syndrome	ClinVar	Detail
NM_000314.8(PTEN):c.493-1G>A AND Hereditary cancer-predisposing syndrome	ClinVar	Detail
NM_000314.8(PTEN):c.493-1G>A AND Gastric cancer	ClinVar	Detail
NA	DisGeNET	Detail

Overlapped Transcript

Gene	Transcript ID	Chromosome	Start	Stop	Links

Gene: -
dbSNP: rs786204862 dbSNP
Genome: hg19
Position: chr10:89,711,874-89,711,874
Variant Type: snv
Reference Allele: G
Alternative Allele: A

Genome browser