chr11:41915366:C>A Detail (hg19)
Information
Genome
| Assembly | Position |
|---|---|
| hg19 | chr11:41,915,366-41,915,366 |
| hg38 | chr11:41,893,816-41,893,816 View the variant detail on this assembly version. |
HGVS
[No Data.]
Summary
MGeND
| Clinical significance | |
| Variant entry | |
| GWAS entry | |
| Disease area statistics | Show details |
Frequency
| JP | HGVD:[No Data.] |
| ToMMo:0.242 | |
| NCBN:[No Data.] | |
| NCBN(Hondo):[No Data.] | |
| NCBN(Ryukyu):[No Data.] | |
| East asia | ExAC:[No Data.] |
Prediction
ClinVar
| Clinical Significance | |
| Review star | [No Data.] |
| Show details | |
Links
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
| Score | Disease name | Description | Source | Pubmed | Links |
|---|---|---|---|---|---|
| 0.341 | Diabetes Mellitus, Non-Insulin-Dependent | FTO rs8050136 being associated with type 2 diabetes through its effect on obesit... | BeFree | 17786212 | Detail |
| 0.400 | obesity | FTO rs8050136 being associated with type 2 diabetes through its effect on obesit... | BeFree | 17786212 | Detail |
| 0.008 | obesity | FTO rs8050136 being associated with type 2 diabetes through its effect on obesit... | BeFree | 17786212 | Detail |
| 0.421 | Diabetes Mellitus, Non-Insulin-Dependent | FTO rs8050136 being associated with type 2 diabetes through its effect on obesit... | BeFree | 17786212 | Detail |
| 0.090 | Diabetes Mellitus, Non-Insulin-Dependent | In the present study, we aimed to validate the type 2 diabetes susceptibility al... | BeFree | 17827400 | Detail |
| 0.214 | Diabetes Mellitus, Non-Insulin-Dependent | In the present study, we aimed to validate the type 2 diabetes susceptibility al... | BeFree | 17827400 | Detail |
| 0.011 | Diabetes Mellitus, Non-Insulin-Dependent | In the present study, we aimed to validate the type 2 diabetes susceptibility al... | BeFree | 17827400 | Detail |
Annotation
Annotations
| Descrption | Source | Links |
|---|---|---|
| FTO rs8050136 being associated with type 2 diabetes through its effect on obesity); differential lin... | DisGeNET | Detail |
| FTO rs8050136 being associated with type 2 diabetes through its effect on obesity); differential lin... | DisGeNET | Detail |
| FTO rs8050136 being associated with type 2 diabetes through its effect on obesity); differential lin... | DisGeNET | Detail |
| FTO rs8050136 being associated with type 2 diabetes through its effect on obesity); differential lin... | DisGeNET | Detail |
| In the present study, we aimed to validate the type 2 diabetes susceptibility alleles identified in ... | DisGeNET | Detail |
| In the present study, we aimed to validate the type 2 diabetes susceptibility alleles identified in ... | DisGeNET | Detail |
| In the present study, we aimed to validate the type 2 diabetes susceptibility alleles identified in ... | DisGeNET | Detail |
- Gene
- -
- dbSNP
- rs9300039 dbSNP
- Genome
- hg19
- Position
- chr11:41,915,366-41,915,366
- Variant Type
- snv
- Reference Allele
- C
- Alternative Allele
- A
- ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- PASS
- Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- rs9300039
- Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 0.2419
- Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 4054
- Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 16758
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