chr13:28893484:T>C Detail (hg19) (FLT1)

Information

Genome

Assembly Position
hg19 chr13:28,893,484-28,893,484
hg38 chr13:28,319,347-28,319,347 View the variant detail on this assembly version.

HGVS

Type Transcript Protein
RefSeq NM_002019.4:c.3286+76A>G
Ensemble ENST00000282397.9:c.3286+76A>G
Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics Show details

Frequency

JP HGVD:[No Data.]
ToMMo:0.745
NCBN:[No Data.]
NCBN(Hondo):[No Data.]
NCBN(Ryukyu):[No Data.]
East asia ExAC:[No Data.]

Prediction

ClinVar

Clinical Significance
Review star [No Data.]
Show details
Links
Type Database ID Link
Gene MIM 165070 OMIM
HGNC 3763 HGNC
Ensembl ENSG00000102755 Ensembl
NCBI NCBI
Gene Cards Gene Cards
OncoKB OncoKB
Type Database ID Link
Variant TogoVar tgv48114934 TogoVar
COSMIC
MONDO
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
Score Disease name Description Source Pubmed Links
<0.001 gastroesophageal reflux disease In subsequent logistic regression analyses, interactions between 2 SNPs (rs22957... BeFree 21751195 Detail
<0.001 Adenocarcinoma Of Esophagus In subsequent logistic regression analyses, interactions between 2 SNPs (rs22957... BeFree 21751195 Detail
<0.001 Adenocarcinoma Of Esophagus In subsequent logistic regression analyses, interactions between 2 SNPs (rs22957... BeFree 21751195 Detail
<0.001 Adenocarcinoma Of Esophagus In subsequent logistic regression analyses, interactions between 2 SNPs (rs22957... BeFree 21751195 Detail
<0.001 gastroesophageal reflux disease In subsequent logistic regression analyses, interactions between 2 SNPs (rs22957... BeFree 21751195 Detail
<0.001 gastroesophageal reflux disease In subsequent logistic regression analyses, interactions between 2 SNPs (rs22957... BeFree 21751195 Detail
<0.001 Adenocarcinoma Of Esophagus In subsequent logistic regression analyses, interactions between 2 SNPs (rs22957... BeFree 21751195 Detail
Annotation

Annotations

DescrptionSourceLinks
In subsequent logistic regression analyses, interactions between 2 SNPs (rs2295778 of HIF1AN, rs1333... DisGeNET Detail
In subsequent logistic regression analyses, interactions between 2 SNPs (rs2295778 of HIF1AN, rs1333... DisGeNET Detail
In subsequent logistic regression analyses, interactions between 2 SNPs (rs2295778 of HIF1AN, rs1333... DisGeNET Detail
In subsequent logistic regression analyses, interactions between 2 SNPs (rs2295778 of HIF1AN, rs1333... DisGeNET Detail
In subsequent logistic regression analyses, interactions between 2 SNPs (rs2295778 of HIF1AN, rs1333... DisGeNET Detail
In subsequent logistic regression analyses, interactions between 2 SNPs (rs2295778 of HIF1AN, rs1333... DisGeNET Detail
In subsequent logistic regression analyses, interactions between 2 SNPs (rs2295778 of HIF1AN, rs1333... DisGeNET Detail

Overlapped Transcript

Gene Transcript ID Chromosome Start Stop Links
Gene
-
dbSNP
rs2296188 dbSNP
Genome
hg19
Position
chr13:28,893,484-28,893,484
Variant Type
snv
Reference Allele
T
Alternative Allele
C
ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
PASS
Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
rs2296188
Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
0.7446
Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
12480
Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
16760
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