chr17:7577124:C>A Detail (hg19) (TP53)

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Summary
Information
Links
Disease area statistics
MGeND
ClinVar
CIViC
DisGeNET
Annotation
Genome browser

Information

Genome

Assembly	Position
hg19	chr17:7,577,124-7,577,124
hg38	chr17:7,673,806-7,673,806 View the variant detail on this assembly version.

HGVS

TP53

Type	Transcript	Protein
RefSeq	NM_001126113.2:c.814G>T	NP_001119585.1:p.Val272Leu
	NM_001276695.1:c.814G>T	NP_001263624.1:p.Val272Leu
	NM_001126116.1:c.418G>T	NP_001119588.1:p.Val140Leu
	NM_001276698.1:c.418G>T	NP_001263627.1:p.Val140Leu
	NM_000546.5:c.814G>T	NP_000537.3:p.Val272Leu
	NM_001126112.2:c.814G>T	NP_001119584.1:p.Val272Leu
	NM_001276760.1:c.814G>T	NP_001263689.1:p.Val272Leu
	NM_001276761.1:c.814G>T	NP_001263690.1:p.Val272Leu
	NM_001126115.1:c.337G>T	NP_001119587.1:p.Val113Leu
	NM_001276697.1:c.337G>T	NP_001263626.1:p.Val113Leu
	NM_001126118.1:c.697G>T	NP_001119590.1:p.Val233Leu
	NM_001126117.1:c.337G>T	NP_001119589.1:p.Val113Leu
	NM_001276699.1:c.337G>T	NP_001263628.1:p.Val113Leu
	NM_001276696.1:c.697G>T	NP_001263625.1:p.Val233Leu
Ensemble	ENST00000576024.2:c.814G>T	ENST00000576024.2:p.Val272Leu
	ENST00000455263.6:c.814G>T	ENST00000455263.6:p.Val272Leu
	ENST00000504290.5:c.418G>T	ENST00000504290.5:p.Val140Leu
	ENST00000504937.5:c.418G>T	ENST00000504937.5:p.Val140Leu
	ENST00000510385.5:c.418G>T	ENST00000510385.5:p.Val140Leu
	ENST00000445888.6:c.814G>T	ENST00000445888.6:p.Val272Leu
	ENST00000604348.6:c.793G>T	ENST00000604348.6:p.Val265Leu
	ENST00000269305.9:c.814G>T	ENST00000269305.9:p.Val272Leu
	ENST00000359597.8:c.814G>T	ENST00000359597.8:p.Val272Leu
	ENST00000618944.4:c.337G>T	ENST00000618944.4:p.Val113Leu
	ENST00000619186.4:c.337G>T	ENST00000619186.4:p.Val113Leu
	ENST00000413465.6:c.782+375G>T
	ENST00000420246.6:c.814G>T	ENST00000420246.6:p.Val272Leu
	ENST00000610292.4:c.697G>T	ENST00000610292.4:p.Val233Leu
	ENST00000610538.4:c.697G>T	ENST00000610538.4:p.Val233Leu
	ENST00000610623.4:c.337G>T	ENST00000610623.4:p.Val113Leu
	ENST00000619485.4:c.697G>T	ENST00000619485.4:p.Val233Leu
	ENST00000620739.4:c.697G>T	ENST00000620739.4:p.Val233Leu
	ENST00000622645.4:c.697G>T	ENST00000622645.4:p.Val233Leu
	ENST00000714356.1:c.697G>T	ENST00000714356.1:p.Val233Leu
	ENST00000714357.1:c.814G>T	ENST00000714357.1:p.Val272Leu
	ENST00000714359.1:c.814G>T	ENST00000714359.1:p.Val272Leu
	ENST00000714408.1:c.814G>T	ENST00000714408.1:p.Val272Leu
	ENST00000714409.1:c.814G>T	ENST00000714409.1:p.Val272Leu

Summary

MGeND

Clinical significance	Likely pathogenic not provided
Variant entry	14
GWAS entry
Disease area statistics	Show details

Frequency

[No Data.]

Prediction

ClinVar

Clinical Significance	Likely pathogenic
Review star
Show details

Links

TP53

Type	Database	ID	Link
Gene	MIM	191170	OMIM
	HGNC	11998	HGNC
	Ensembl	ENSG00000141510	Ensembl
	NCBI		NCBI
	Gene Cards		Gene Cards
	OncoKB		OncoKB

Type	Database	ID	Link
Variant	TogoVar
	COSMIC	COSM2744536	COSMIC
	MONDO

Disease area statistics

MGeND

Clinical significance	Condition	Origin	Submission ID	Submitter	Institute
not provided	bronchus or lung, unspecified	not provided	MGS000041 (TMGS000094)	Hitoshi Nakagama	National Cancer Center Japan
not provided	intrahepatic bile duct carcinoma	not provided	MGS000040 (TMGS000095)	Hitoshi Nakagama	National Cancer Center Japan
Likely pathogenic	Squamous cell carcinoma of esophagus (disorder)	unknown	MGS000021 (TMGS000080)	Manabu Muto	Kyoto University
not provided	fundus of stomach	not provided	MGS000042 (TMGS000093)	Hitoshi Nakagama	National Cancer Center Japan
not provided	pyloric antrum	not provided	MGS000042 (TMGS000093)	Hitoshi Nakagama	National Cancer Center Japan
not provided	sigmoid colon	not provided	MGS000042 (TMGS000093)	Hitoshi Nakagama	National Cancer Center Japan
not provided	colon, unspecified	not provided	MGS000042 (TMGS000093)	Hitoshi Nakagama	National Cancer Center Japan
not provided	bronchus or lung, unspecified	not provided	MGS000042 (TMGS000093)	Hitoshi Nakagama	National Cancer Center Japan

ClinVar

Clinical significance	Last evaluated	Review status	Condition	Origin	Links
Likely pathogenic	2024-02-20	criteria provided, multiple submitters, no conflicts	Li-Fraumeni syndrome 1	germline unknown	Detail
Likely pathogenic	2022-10-18	criteria provided, single submitter	Hereditary cancer-predisposing syndrome	germline	Detail
Likely pathogenic	2016-05-31	no assertion criteria provided	gastric adenocarcinoma	somatic	Detail
Likely pathogenic	2016-05-31	no assertion criteria provided	Breast neoplasm	somatic	Detail
Likely pathogenic	2016-05-31	no assertion criteria provided	Squamous cell carcinoma of the head and neck	somatic	Detail
Likely pathogenic	2016-05-31	no assertion criteria provided		somatic	Detail
Likely pathogenic	2016-05-31	no assertion criteria provided		somatic	Detail
Likely pathogenic	2016-05-31	no assertion criteria provided	Neoplasm of the large intestine	somatic	Detail
Likely pathogenic	2016-05-31	no assertion criteria provided	ovarian serous cystadenocarcinoma	somatic	Detail
Likely pathogenic	2016-05-31	no assertion criteria provided	pancreatic adenocarcinoma	somatic	Detail
Likely pathogenic	2016-05-31	no assertion criteria provided	Papillary renal cell carcinoma type 1	somatic	Detail
Likely pathogenic	2016-05-31	no assertion criteria provided	medulloblastoma	somatic	Detail
Likely pathogenic	2016-05-31	no assertion criteria provided	lung adenocarcinoma	somatic	Detail
Likely pathogenic	2016-05-31	no assertion criteria provided	Malignant neoplasm of body of uterus	somatic	Detail
Likely pathogenic	2016-05-31	no assertion criteria provided	multiple myeloma	somatic	Detail
Likely pathogenic	2022-02-20	criteria provided, single submitter	Li-Fraumeni syndrome	germline	Detail

CIViC

[No Data.]

DisGeNET

Score	Disease name	Description	Source	Pubmed	Links
0.441	Li-Fraumeni syndrome 1	NA	CLINVAR		Detail
0.122	Neoplastic Syndromes, Hereditary	NA	CLINVAR		Detail

Annotation

Annotations

Descrption	Source	Links
NM_000546.6(TP53):c.814G>T (p.Val272Leu) AND Li-Fraumeni syndrome 1	ClinVar	Detail
NM_000546.6(TP53):c.814G>T (p.Val272Leu) AND Hereditary cancer-predisposing syndrome	ClinVar	Detail
NM_000546.6(TP53):c.814G>T (p.Val272Leu) AND Gastric adenocarcinoma	ClinVar	Detail
NM_000546.6(TP53):c.814G>T (p.Val272Leu) AND Breast neoplasm	ClinVar	Detail
NM_000546.6(TP53):c.814G>T (p.Val272Leu) AND Squamous cell carcinoma of the head and neck	ClinVar	Detail
NM_000546.6(TP53):c.814G>T (p.Val272Leu) AND Squamous cell carcinoma of the skin	ClinVar	Detail
NM_000546.6(TP53):c.814G>T (p.Val272Leu) AND Transitional cell carcinoma of the bladder	ClinVar	Detail
NM_000546.6(TP53):c.814G>T (p.Val272Leu) AND Neoplasm of the large intestine	ClinVar	Detail
NM_000546.6(TP53):c.814G>T (p.Val272Leu) AND Ovarian serous cystadenocarcinoma	ClinVar	Detail
NM_000546.6(TP53):c.814G>T (p.Val272Leu) AND Pancreatic adenocarcinoma	ClinVar	Detail
NM_000546.6(TP53):c.814G>T (p.Val272Leu) AND Papillary renal cell carcinoma type 1	ClinVar	Detail
NM_000546.6(TP53):c.814G>T (p.Val272Leu) AND Medulloblastoma	ClinVar	Detail
NM_000546.6(TP53):c.814G>T (p.Val272Leu) AND Lung adenocarcinoma	ClinVar	Detail
NM_000546.6(TP53):c.814G>T (p.Val272Leu) AND Malignant neoplasm of body of uterus	ClinVar	Detail
NM_000546.6(TP53):c.814G>T (p.Val272Leu) AND Multiple myeloma	ClinVar	Detail
NM_000546.6(TP53):c.814G>T (p.Val272Leu) AND Li-Fraumeni syndrome	ClinVar	Detail
NA	DisGeNET	Detail
NA	DisGeNET	Detail

Overlapped Transcript Coordinates

Gene	Transcript ID	Exon Number	Chromosome	Start	Stop	Type	Amino Mutation	Transcript Position	Links

Overlapped Transcript

Gene	Transcript ID	Chromosome	Start	Stop	Links

Gene: -
dbSNP: rs121912657 dbSNP
Genome: hg19
Position: chr17:7,577,124-7,577,124
Variant Type: snv
Reference Allele: C
Alternative Allele: A

Genome browser

chr17:7577124:C>A Detail (hg19) (TP53)

Genome

HGVS

MGeND

Frequency

Prediction

ClinVar

Image provided by the submitter

Annotations

Overlapped Transcript Coordinates

Overlapped Transcript