chr2:47702388:C>T Detail (hg19) (MSH2)

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Summary
Information
Links
Disease area statistics
MGeND
ClinVar
CIViC
DisGeNET
Annotation
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Information

Genome

Assembly	Position
hg19	chr2:47,702,388-47,702,388
hg38	chr2:47,475,249-47,475,249 View the variant detail on this assembly version.

HGVS

MSH2

Type	Transcript	Protein
RefSeq	NM_000251.2:c.1984C>T	NP_000242.1:p.Gln662Ter
	NM_001258281.1:c.1786C>T	NP_001245210.1:p.Gln596Ter
Ensemble	ENST00000233146.7:c.1984C>T	ENST00000233146.7:p.Gln662Ter
	ENST00000406134.5:c.1984C>T	ENST00000406134.5:p.Gln662Ter
	ENST00000543555.6:c.1786C>T	ENST00000543555.6:p.Gln596Ter
	ENST00000645506.1:c.1984C>T	ENST00000645506.1:p.Gln662Ter
	ENST00000713854.1:c.1834C>T	ENST00000713854.1:p.Gln612Ter
	ENST00000713919.1:c.1705C>T	ENST00000713919.1:p.Gln569Ter

Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics	Show details

Frequency

[No Data.]

Prediction

ClinVar

Clinical Significance	Pathogenic Likely pathogenic
Review star
Show details

Links

MSH2

Type	Database	ID	Link
Gene	MIM	609309	OMIM
	HGNC	7325	HGNC
	Ensembl	ENSG00000095002	Ensembl
	NCBI		NCBI
	Gene Cards		Gene Cards
	OncoKB		OncoKB

Type	Database	ID	Link
Variant	TogoVar
	COSMIC
	MONDO

Disease area statistics

[No Data.]

MGeND

[No Data.]

ClinVar

Clinical significance	Last evaluated	Review status	Condition	Origin	Links
Pathogenic		no assertion criteria provided	Carcinoma of colon	unknown	Detail
Pathogenic	2018-12-05	criteria provided, single submitter	not provided	germline	Detail
Likely pathogenic	2019-01-04	criteria provided, single submitter	Hereditary nonpolyposis colon cancer	germline	Detail
Pathogenic	2024-01-19	criteria provided, single submitter	Hereditary nonpolyposis colorectal neoplasms	germline	Detail
Pathogenic	2020-09-21	criteria provided, single submitter	Hereditary cancer-predisposing syndrome	germline	Detail
Pathogenic	2023-08-04	criteria provided, single submitter	Lynch syndrome 1	unknown	Detail

CIViC

[No Data.]

DisGeNET

Score	Disease name	Description	Source	Pubmed	Links
0.320	Colorectal cancer, hereditary nonpolyposis, type 1	NA	CLINVAR		Detail

Annotation

Annotations

Descrption	Source	Links
NM_000251.3(MSH2):c.1984C>T (p.Gln662Ter) AND Carcinoma of colon	ClinVar	Detail
NM_000251.3(MSH2):c.1984C>T (p.Gln662Ter) AND not provided	ClinVar	Detail
NM_000251.3(MSH2):c.1984C>T (p.Gln662Ter) AND Hereditary nonpolyposis colon cancer	ClinVar	Detail
NM_000251.3(MSH2):c.1984C>T (p.Gln662Ter) AND Hereditary nonpolyposis colorectal neoplasms	ClinVar	Detail
NM_000251.3(MSH2):c.1984C>T (p.Gln662Ter) AND Hereditary cancer-predisposing syndrome	ClinVar	Detail
NM_000251.3(MSH2):c.1984C>T (p.Gln662Ter) AND Lynch syndrome 1	ClinVar	Detail
NA	DisGeNET	Detail

Overlapped Transcript Coordinates

Gene	Transcript ID	Exon Number	Chromosome	Start	Stop	Type	Amino Mutation	Transcript Position	Links

Overlapped Transcript

Gene	Transcript ID	Chromosome	Start	Stop	Links

Gene: -
dbSNP: rs786204321 dbSNP
Genome: hg19
Position: chr2:47,702,388-47,702,388
Variant Type: snv
Reference Allele: C
Alternative Allele: T

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