chr3:37042549:G>A Detail (hg19) (MLH1)

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Summary
Information
Links
Disease area statistics
MGeND
ClinVar
CIViC
DisGeNET
Annotation
Genome browser

Information

Genome

Assembly	Position
hg19	chr3:37,042,549-37,042,549
hg38	chr3:37,001,058-37,001,058 View the variant detail on this assembly version.

HGVS

MLH1

Type	Transcript	Protein
RefSeq	NM_000249.3:c.306+5G>A
	NM_001167617.1:c.12+10G>A
	NM_001167618.1:c.-418+5G>A
	NM_001258271.1:c.306+5G>A
	NM_001258274.1:c.-418+5G>A
	NM_001258273.1:c.-418+5G>A
	NM_001167619.1:c.-326+5G>A
Ensemble	ENST00000231790.8:c.306+5G>A
	ENST00000435176.5:c.12+10G>A
	ENST00000441265.6:c.-418+5G>A
	ENST00000450420.6:c.306+5G>A
	ENST00000455445.6:c.-418+5G>A
	ENST00000456676.7:c.306+5G>A
	ENST00000458205.6:c.-418+5G>A
	ENST00000466900.6:c.-524+5G>A
	ENST00000485889.2:c.-418+5G>A
	ENST00000492474.6:c.-418+5G>A
	ENST00000536378.5:c.-418+5G>A
	ENST00000539477.6:c.-326+5G>A
	ENST00000616768.6:c.306+5G>A
	ENST00000673673.2:c.306+5G>A
	ENST00000673715.1:c.306+5G>A
	ENST00000673899.1:c.306+5G>A
	ENST00000673990.2:c.-624+5G>A
	ENST00000674019.1:c.-418+5G>A
	ENST00000713802.1:c.208-3343G>A

Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics	Show details

Frequency

[No Data.]

Prediction

ClinVar

Clinical Significance	Pathogenic
Review star
Show details

Links

MLH1

Type	Database	ID	Link
Gene	MIM	120436	OMIM
	HGNC	7127	HGNC
	Ensembl	ENSG00000076242	Ensembl
	NCBI		NCBI
	Gene Cards		Gene Cards
	OncoKB		OncoKB

Type	Database	ID	Link
Variant	TogoVar
	COSMIC
	MONDO

Disease area statistics

[No Data.]

MGeND

[No Data.]

ClinVar

Clinical significance	Last evaluated	Review status	Condition	Origin	Links
Pathogenic	2010-10-01	no assertion criteria provided	Colorectal cancer, hereditary nonpolyposis, type 2	germline	Detail
Pathogenic	2013-09-05	reviewed by expert panel	Lynch syndrome	germline	Detail
Pathogenic	2023-07-03	criteria provided, single submitter	not provided	germline unknown	Detail
Pathogenic	2018-10-31	criteria provided, single submitter	Muir-Torré syndrome,Colorectal cancer, hereditary nonpolyposis, type 2,Mismatch repair cancer syndrome 1	unknown	Detail
Pathogenic	2018-10-31	criteria provided, single submitter	Muir-Torré syndrome,Colorectal cancer, hereditary nonpolyposis, type 2,Mismatch repair cancer syndrome 1	unknown	Detail
Pathogenic	2018-10-31	criteria provided, single submitter	Muir-Torré syndrome,Colorectal cancer, hereditary nonpolyposis, type 2,Mismatch repair cancer syndrome 1	unknown	Detail
Pathogenic	2023-03-31	criteria provided, multiple submitters, no conflicts	Hereditary cancer-predisposing syndrome	germline	Detail
Pathogenic	2023-01-16	criteria provided, single submitter	Hereditary nonpolyposis colorectal neoplasms	germline	Detail
not provided		no assertion provided	Lynch syndrome 1	germline	Detail

CIViC

[No Data.]

DisGeNET

Score	Disease name	Description	Source	Pubmed	Links
0.440	Hereditary Non-Polyposis Colon Cancer Type 2	NA	CLINVAR		Detail
0.329	Hereditary Nonpolyposis Colorectal Cancer	NA	CLINVAR		Detail

Annotation

Annotations

Descrption	Source	Links
NM_000249.4(MLH1):c.306+5G>A AND Colorectal cancer, hereditary nonpolyposis, type 2	ClinVar	Detail
NM_000249.4(MLH1):c.306+5G>A AND Lynch syndrome	ClinVar	Detail
NM_000249.4(MLH1):c.306+5G>A AND not provided	ClinVar	Detail
NM_000249.4(MLH1):c.306+5G>A AND multiple conditions	ClinVar	Detail
NM_000249.4(MLH1):c.306+5G>A AND multiple conditions	ClinVar	Detail
NM_000249.4(MLH1):c.306+5G>A AND multiple conditions	ClinVar	Detail
NM_000249.4(MLH1):c.306+5G>A AND Hereditary cancer-predisposing syndrome	ClinVar	Detail
NM_000249.4(MLH1):c.306+5G>A AND Hereditary nonpolyposis colorectal neoplasms	ClinVar	Detail
NM_000249.4(MLH1):c.306+5G>A AND Lynch syndrome 1	ClinVar	Detail
NA	DisGeNET	Detail
NA	DisGeNET	Detail

Overlapped Transcript

Gene	Transcript ID	Chromosome	Start	Stop	Links

Gene: -
dbSNP: rs267607735 dbSNP
Genome: hg19
Position: chr3:37,042,549-37,042,549
Variant Type: snv
Reference Allele: G
Alternative Allele: A

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