chr4:90797301:A>G Detail (hg19)

Information

Genome

Assembly Position
hg19 chr4:90,797,301-90,797,301
hg38 chr4:89,876,150-89,876,150 View the variant detail on this assembly version.

HGVS

[No Data.]
Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics Show details

Frequency

JP HGVD:[No Data.]
ToMMo:0.329
NCBN:[No Data.]
NCBN(Hondo):[No Data.]
NCBN(Ryukyu):[No Data.]
East asia ExAC:[No Data.]

Prediction

ClinVar

Clinical Significance
Review star [No Data.]
Show details
Links
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
Score Disease name Description Source Pubmed Links
0.001 Diabetes Mellitus, Insulin-Dependent We identified novel cisSNP/transcript associations for human disease-associated ... BeFree 22685416 Detail
<0.001 ulcerative colitis We identified novel cisSNP/transcript associations for human disease-associated ... BeFree 22685416 Detail
0.006 Diabetes Mellitus, Insulin-Dependent We identified novel cisSNP/transcript associations for human disease-associated ... BeFree 22685416 Detail
<0.001 Diabetes Mellitus, Insulin-Dependent We identified novel cisSNP/transcript associations for human disease-associated ... BeFree 22685416 Detail
0.121 ulcerative colitis We identified novel cisSNP/transcript associations for human disease-associated ... BeFree 22685416 Detail
<0.001 ulcerative colitis We identified novel cisSNP/transcript associations for human disease-associated ... BeFree 22685416 Detail
0.123 progressive supranuclear palsy We identified novel cisSNP/transcript associations for human disease-associated ... BeFree 22685416 Detail
<0.001 progressive supranuclear palsy We identified novel cisSNP/transcript associations for human disease-associated ... BeFree 22685416 Detail
0.005 Parkinson disease [Genome-wide association study reveals genetic risk underlying Parkinson\'s dise... GAD 19915575 Detail
Annotation

Annotations

DescrptionSourceLinks
We identified novel cisSNP/transcript associations for human disease-associated variants, including ... DisGeNET Detail
We identified novel cisSNP/transcript associations for human disease-associated variants, including ... DisGeNET Detail
We identified novel cisSNP/transcript associations for human disease-associated variants, including ... DisGeNET Detail
We identified novel cisSNP/transcript associations for human disease-associated variants, including ... DisGeNET Detail
We identified novel cisSNP/transcript associations for human disease-associated variants, including ... DisGeNET Detail
We identified novel cisSNP/transcript associations for human disease-associated variants, including ... DisGeNET Detail
We identified novel cisSNP/transcript associations for human disease-associated variants, including ... DisGeNET Detail
We identified novel cisSNP/transcript associations for human disease-associated variants, including ... DisGeNET Detail
[Genome-wide association study reveals genetic risk underlying Parkinson\'s disease.] DisGeNET Detail
Gene
-
dbSNP
rs6532197 dbSNP
Genome
hg19
Position
chr4:90,797,301-90,797,301
Variant Type
snv
Reference Allele
A
Alternative Allele
G
ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
PASS
Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
rs6532197
Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
0.3289
Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
5512
Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
16760
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