chr7:143049017:C>T Detail (hg19) (CLCN1)

Information

Genome

Assembly Position
hg19 chr7:143,049,017-143,049,017
hg38 chr7:143,351,924-143,351,924 View the variant detail on this assembly version.

HGVS

Type Transcript Protein
RefSeq NM_000083.2:c.2926C>T NP_000074.2:p.Arg976Ter
NR_046453.1:c.2926C>T
Ensemble ENST00000343257.7:c.2926C>T ENST00000343257.7:p.Arg976Ter
Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics Show details

Frequency

JP HGVD:<0.001
ToMMo:<0.001
NCBN:[No Data.]
NCBN(Hondo):[No Data.]
NCBN(Ryukyu):[No Data.]
East asia ExAC:<0.001

Prediction

ClinVar

Clinical Significance Uncertain significance
Review star
Show details
Links
Type Database ID Link
Gene MIM 118425 OMIM
HGNC 2019 HGNC
Ensembl ENSG00000188037 Ensembl
NCBI NCBI
Gene Cards Gene Cards
OncoKB OncoKB
Type Database ID Link
Variant TogoVar tgv31299224 TogoVar
COSMIC
MONDO
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
Clinical significance Last evaluated Review status Condition Origin Links
Uncertain significance 2022-12-15 criteria provided, multiple submitters, no conflicts not provided germline Detail
not provided no assertion provided Batten-Turner congenital myopathy germline Detail
Uncertain significance 2022-09-27 criteria provided, single submitter Congenital myotonia, autosomal recessive form,Congenital myotonia, autosomal dominant form germline Detail
Uncertain significance 2022-09-27 criteria provided, single submitter Congenital myotonia, autosomal recessive form,Congenital myotonia, autosomal dominant form germline Detail
Uncertain significance 2023-12-14 criteria provided, single submitter not specified germline Detail
CIViC
[No Data.]
DisGeNET
Score Disease name Description Source Pubmed Links
0.388 myotonia congenita NA CLINVAR Detail
Annotation

Annotations

DescrptionSourceLinks
NM_000083.3(CLCN1):c.2926C>T (p.Arg976Ter) AND not provided ClinVar Detail
NM_000083.3(CLCN1):c.2926C>T (p.Arg976Ter) AND Batten-Turner congenital myopathy ClinVar Detail
NM_000083.3(CLCN1):c.2926C>T (p.Arg976Ter) AND multiple conditions ClinVar Detail
NM_000083.3(CLCN1):c.2926C>T (p.Arg976Ter) AND multiple conditions ClinVar Detail
NM_000083.3(CLCN1):c.2926C>T (p.Arg976Ter) AND not specified ClinVar Detail
NA DisGeNET Detail

Overlapped Transcript Coordinates

Gene Transcript ID Exon Number Chromosome Start Stop Type Amino Mutation Transcript Position Links

Overlapped Transcript

Gene Transcript ID Chromosome Start Stop Links
Gene
-
dbSNP
rs142539932 dbSNP
Genome
hg19
Position
chr7:143,049,017-143,049,017
Variant Type
snv
Reference Allele
C
Alternative Allele
T
Filtering Status (HGVD)
PASS
Filtering Status (HGVD)
LowQual
# of samples (HGVD)
1051
Mean of sample read depth (HGVD)
26.63
Standard deviation of sample read depth (HGVD)
15.36
Number of reference allele (HGVD)
2101
Number of alternative allele (HGVD)
1
Allele Frequency (HGVD)
4.757373929590866E-4
Gene Symbol (HGVD)
CLCN1
ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
PASS
Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
rs142539932
Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
0.0001
Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
1
Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
16758
East Asian Chromosome Counts (ExAC)
8644
East Asian Allele Counts (ExAC)
1
East Asian Heterozygous Counts (ExAC)
1
East Asian Homozygous Counts (ExAC)
0
East Asian Allele Frequency (ExAC)
1.1568718186024989E-4
Chromosome Counts in All Race (ExAC)
121022
Allele Counts in All Race (ExAC)
32
Heterozygous Counts in All Race (ExAC)
32
Homozygous Counts in All Race (ExAC)
0
Allele Frequency in All Race (ExAC)
2.644147345110806E-4
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