chr9:87282527:C>T Detail (hg19)

Information

Genome

Assembly Position
hg19 chr9:87,282,527-87,282,527
hg38 chr9:84,667,612-84,667,612 View the variant detail on this assembly version.

HGVS

[No Data.]
Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics Show details

Frequency

JP HGVD:[No Data.]
ToMMo:0.557
NCBN:[No Data.]
NCBN(Hondo):[No Data.]
NCBN(Ryukyu):[No Data.]
East asia ExAC:[No Data.]

Prediction

ClinVar

Clinical Significance
Review star [No Data.]
Show details
Links
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
Score Disease name Description Source Pubmed Links
<0.001 Mental Depression Therefore, we examined whether a single-nucleotide polymorphism in the BDNF gene... BeFree 24047966 Detail
0.248 depressive disorder Therefore, we examined whether a single-nucleotide polymorphism in the BDNF gene... BeFree 24047966 Detail
0.003 asthma Analysis stratified by asthma-related phenotype revealed an association between ... BeFree 22468730 Detail
0.006 asthma Analysis stratified by asthma-related phenotype revealed an association between ... BeFree 22468730 Detail
<0.001 depressive disorder Therefore, we examined whether a single-nucleotide polymorphism in the BDNF gene... BeFree 24047966 Detail
0.120 Mental Depression Therefore, we examined whether a single-nucleotide polymorphism in the BDNF gene... BeFree 24047966 Detail
Annotation

Annotations

DescrptionSourceLinks
Therefore, we examined whether a single-nucleotide polymorphism in the BDNF gene (rs56164415) and re... DisGeNET Detail
Therefore, we examined whether a single-nucleotide polymorphism in the BDNF gene (rs56164415) and re... DisGeNET Detail
Analysis stratified by asthma-related phenotype revealed an association between atopy and NGFR (rs37... DisGeNET Detail
Analysis stratified by asthma-related phenotype revealed an association between atopy and NGFR (rs37... DisGeNET Detail
Therefore, we examined whether a single-nucleotide polymorphism in the BDNF gene (rs56164415) and re... DisGeNET Detail
Therefore, we examined whether a single-nucleotide polymorphism in the BDNF gene (rs56164415) and re... DisGeNET Detail
Gene
-
dbSNP
rs1212171 dbSNP
Genome
hg19
Position
chr9:87,282,527-87,282,527
Variant Type
snv
Reference Allele
C
Alternative Allele
T
ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
PASS
Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
rs1212171
Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
0.557
Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
9336
Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
16760
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