chr9:87542369:G>T Detail (hg19) (NTRK2)

Information

Genome

Assembly Position
hg19 chr9:87,542,369-87,542,369
hg38 chr9:84,927,454-84,927,454 View the variant detail on this assembly version.

HGVS

Type Transcript Protein
RefSeq NM_001018064.2:c.1550-6708G>T
Ensemble ENST00000277120.8:c.1634-6708G>T
ENST00000323115.11:c.1550-6708G>T
Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics Show details

Frequency

JP HGVD:[No Data.]
ToMMo:0.460
NCBN:[No Data.]
NCBN(Hondo):[No Data.]
NCBN(Ryukyu):[No Data.]
East asia ExAC:[No Data.]

Prediction

ClinVar

Clinical Significance
Review star [No Data.]
Show details
Links
Type Database ID Link
Gene MIM 600456 OMIM
HGNC 8032 HGNC
Ensembl ENSG00000148053 Ensembl
NCBI NCBI
Gene Cards Gene Cards
OncoKB OncoKB
Type Database ID Link
Variant TogoVar tgv36655049 TogoVar
COSMIC
MONDO
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
Score Disease name Description Source Pubmed Links
0.042 major depressive disorder We genotyped the BDNF gene Val66Met (rs6265) polymorphism and four single-nucleo... BeFree 20014955 Detail
0.002 major depressive disorder We genotyped the BDNF gene Val66Met (rs6265) polymorphism and four single-nucleo... BeFree 20014955 Detail
0.002 Unipolar Depression We genotyped the BDNF gene Val66Met (rs6265) polymorphism and four single-nucleo... BeFree 20014955 Detail
0.022 Unipolar Depression We genotyped the BDNF gene Val66Met (rs6265) polymorphism and four single-nucleo... BeFree 20014955 Detail
Annotation

Annotations

DescrptionSourceLinks
We genotyped the BDNF gene Val66Met (rs6265) polymorphism and four single-nucleotide polymorphisms (... DisGeNET Detail
We genotyped the BDNF gene Val66Met (rs6265) polymorphism and four single-nucleotide polymorphisms (... DisGeNET Detail
We genotyped the BDNF gene Val66Met (rs6265) polymorphism and four single-nucleotide polymorphisms (... DisGeNET Detail
We genotyped the BDNF gene Val66Met (rs6265) polymorphism and four single-nucleotide polymorphisms (... DisGeNET Detail

Overlapped Transcript

Gene Transcript ID Chromosome Start Stop Links
Gene
-
dbSNP
rs1545285 dbSNP
Genome
hg19
Position
chr9:87,542,369-87,542,369
Variant Type
snv
Reference Allele
G
Alternative Allele
T
ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
PASS
Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
rs1545285
Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
0.46
Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
7710
Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
16760
Genome browser