chr10:43102410:G>A Detail (hg38) (RET)

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Summary
Information
Links
Disease area statistics
MGeND
ClinVar
CIViC
DisGeNET
Annotation
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Information

Genome

Assembly	Position
hg19	chr10:43,597,858-43,597,858 View the variant detail on this assembly version.
hg38	chr10:43,102,410-43,102,410

HGVS

Type	Transcript	Protein
RefSeq	NM_020630.4:c.406G>A	NP_065681.1:p.Glu136Lys
	NM_020975.4:c.406G>A	NP_066124.1:p.Glu136Lys
Ensemble	ENST00000340058.6:c.406G>A	ENST00000340058.6:p.Glu136Lys
	ENST00000355710.8:c.406G>A	ENST00000355710.8:p.Glu136Lys
	ENST00000615310.5:c.406G>A	ENST00000615310.5:p.Glu136Lys
	ENST00000638465.2:c.*5G>A
	ENST00000640619.2:c.338-61G>A
	ENST00000683278.2:c.*5G>A
	ENST00000684216.2:c.406G>A	ENST00000684216.2:p.Glu136Lys
	ENST00000713926.1:c.338-61G>A

Summary

MGeND

Clinical significance
Variant entry
GWAS entry
Disease area statistics	Show details

Frequency

JP	HGVD:[No Data.]
	ToMMo:[No Data.]
	NCBN:[No Data.]
	NCBN(Hondo):[No Data.]
	NCBN(Ryukyu):[No Data.]
East asia	ExAC:<0.001

Prediction

ClinVar

Clinical Significance	Conflicting classifications of pathogenicity
Review star
Show details

Links

Type	Database	ID	Link
Gene	MIM	164761	OMIM
	HGNC	9967	HGNC
	Ensembl	ENSG00000165731	Ensembl
	NCBI		NCBI
	Gene Cards		Gene Cards
	OncoKB		OncoKB

Type	Database	ID	Link
Variant	TogoVar
	COSMIC	COSM6981790	COSMIC
	MONDO

Disease area statistics

[No Data.]

MGeND

[No Data.]

ClinVar

Clinical significance	Last evaluated	Review status	Condition	Origin	Links
Uncertain significance	2024-01-05	criteria provided, multiple submitters, no conflicts	Multiple endocrine neoplasia, type 2	germline	Detail
Likely benign	2023-07-12	criteria provided, single submitter	Hereditary cancer-predisposing syndrome	germline	Detail
Uncertain significance	2017-01-04	criteria provided, single submitter	multiple endocrine neoplasia type 2A	unknown	Detail
Uncertain significance	2011-03-18	no assertion criteria provided	not specified	germline	Detail
Uncertain significance	2023-03-30	criteria provided, multiple submitters, no conflicts	not provided	germline unknown	Detail
Uncertain significance	2021-11-27	criteria provided, single submitter	familial medullary thyroid carcinoma,pheochromocytoma,multiple endocrine neoplasia type 2A,multiple endocrine neoplasia type 2B,Hirschsprung disease, susceptibility to, 1	unknown	Detail
Uncertain significance	2021-11-27	criteria provided, single submitter	familial medullary thyroid carcinoma,pheochromocytoma,multiple endocrine neoplasia type 2A,multiple endocrine neoplasia type 2B,Hirschsprung disease, susceptibility to, 1	unknown	Detail
Uncertain significance	2021-11-27	criteria provided, single submitter	familial medullary thyroid carcinoma,pheochromocytoma,multiple endocrine neoplasia type 2A,multiple endocrine neoplasia type 2B,Hirschsprung disease, susceptibility to, 1	unknown	Detail
Uncertain significance	2021-11-27	criteria provided, single submitter	familial medullary thyroid carcinoma,pheochromocytoma,multiple endocrine neoplasia type 2A,multiple endocrine neoplasia type 2B,Hirschsprung disease, susceptibility to, 1	unknown	Detail
Uncertain significance	2021-11-27	criteria provided, single submitter	familial medullary thyroid carcinoma,pheochromocytoma,multiple endocrine neoplasia type 2A,multiple endocrine neoplasia type 2B,Hirschsprung disease, susceptibility to, 1	unknown	Detail
Benign	2022-01-01	criteria provided, single submitter	ovarian cancer	germline	Detail
Uncertain significance	2023-06-30	criteria provided, single submitter	Hirschsprung disease, susceptibility to, 1	unknown	Detail

CIViC

[No Data.]

DisGeNET

Score	Disease name	Description	Source	Pubmed	Links
0.156	Hirschsprung disease 1	NA	CLINVAR		Detail

Annotation

Annotations

Descrption	Source	Links
NM_020975.6(RET):c.406G>A (p.Glu136Lys) AND Multiple endocrine neoplasia, type 2	ClinVar	Detail
NM_020975.6(RET):c.406G>A (p.Glu136Lys) AND Hereditary cancer-predisposing syndrome	ClinVar	Detail
NM_020975.6(RET):c.406G>A (p.Glu136Lys) AND Multiple endocrine neoplasia type 2A	ClinVar	Detail
NM_020975.6(RET):c.406G>A (p.Glu136Lys) AND not specified	ClinVar	Detail
NM_020975.6(RET):c.406G>A (p.Glu136Lys) AND not provided	ClinVar	Detail
NM_020975.6(RET):c.406G>A (p.Glu136Lys) AND multiple conditions	ClinVar	Detail
NM_020975.6(RET):c.406G>A (p.Glu136Lys) AND multiple conditions	ClinVar	Detail
NM_020975.6(RET):c.406G>A (p.Glu136Lys) AND multiple conditions	ClinVar	Detail
NM_020975.6(RET):c.406G>A (p.Glu136Lys) AND multiple conditions	ClinVar	Detail
NM_020975.6(RET):c.406G>A (p.Glu136Lys) AND multiple conditions	ClinVar	Detail
NM_020975.6(RET):c.406G>A (p.Glu136Lys) AND Ovarian cancer	ClinVar	Detail
NM_020975.6(RET):c.406G>A (p.Glu136Lys) AND Hirschsprung disease, susceptibility to, 1	ClinVar	Detail
NA	DisGeNET	Detail

Overlapped Transcript Coordinates

Gene	Transcript ID	Exon Number	Chromosome	Start	Stop	Type	Amino Mutation	Transcript Position	Links

Overlapped Transcript

Gene	Transcript ID	Chromosome	Start	Stop	Links

Gene: -
dbSNP: rs79014735 dbSNP
Genome: hg38
Position: chr10:43,102,410-43,102,410
Variant Type: snv
Reference Allele: G
Alternative Allele: A
East Asian Chromosome Counts (ExAC): 8654
East Asian Allele Counts (ExAC): 3
East Asian Heterozygous Counts (ExAC): 3
East Asian Homozygous Counts (ExAC): 0
East Asian Allele Frequency (ExAC): 3.4666050381326557E-4
Chromosome Counts in All Race (ExAC): 121398
Allele Counts in All Race (ExAC): 10
Heterozygous Counts in All Race (ExAC): 10
Homozygous Counts in All Race (ExAC): 0
Allele Frequency in All Race (ExAC): 8.23736799617786E-5

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